Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8053671.1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED |
| CAI8053673.1 | CYCLIN |
| CAI8053674.1 | CYCLIN |
| CAI8053675.1 | CYCLIN |
| CAI8053672.1 | CYCLIN |
| CAI8053676.1 | BARDET-BIEDL SYNDROME 12 PROTEIN |
| CAI8053677.1 | BARDET-BIEDL SYNDROME 12 PROTEIN |
| CAI8053678.1 | VACUOLAR ATP SYNTHASE SUBUNIT F |
| CAI8053679.1 | VACUOLAR ATP SYNTHASE SUBUNIT F |
| CAI8053682.1 | OXYSTEROL-BINDING PROTEIN-RELATED |
| CAI8053681.1 | OXYSTEROL-BINDING PROTEIN-RELATED |
| CAI8053680.1 | OXYSTEROL-BINDING PROTEIN-RELATED |
| CAI8053683.1 | OXYSTEROL-BINDING PROTEIN-RELATED |
| CAI8053686.1 | OXYSTEROL-BINDING PROTEIN-RELATED |
| CAI8053685.1 | OXYSTEROL-BINDING PROTEIN-RELATED |
| CAI8053684.1 | OXYSTEROL-BINDING PROTEIN-RELATED |
| CAI8053687.1 | OXYSTEROL-BINDING PROTEIN-RELATED |
| CAI8053688.1 | OXYSTEROL-BINDING PROTEIN-RELATED |
| CAI8053689.1 | |
| CAI8053690.1 | CYTIDINE DEAMINASE |
| CAI8053691.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8053692.1 | HERMANSKY-PUDLAK SYNDROME 3 PROTEIN |
| CAI8053693.1 | |
| CAI8053694.1 | CYTOCHROME C OXIDASE SUBUNIT III |
| CAI8053698.1 | CYTOCHROME C OXIDASE SUBUNIT 1 |
| CAI8053697.1 | CYTOCHROME C OXIDASE SUBUNIT 1 |
| CAI8053696.1 | CYTOCHROME C OXIDASE SUBUNIT 1 |
| CAI8053695.1 | CYTOCHROME C OXIDASE SUBUNIT 1 |
| CAI8053699.1 | CYTOCHROME C OXIDASE, SUBUNIT II |
| CAI8053700.1 | INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN |
| CAI8053701.1 | INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN |
| CAI8053702.1 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A |
| CAI8053703.1 | RIBONUCLEASE H1 |
| CAI8053704.1 | - |
| CAI8053705.1 | HYPOTHETICAL CYTOSOLIC PROTEIN-RELATED |
| CAI8053706.1 | |
| CAI8053707.1 | |
| CAI8053708.1 | MULTI-COPPER OXIDASE |
| CAI8053709.1 | |
| CAI8053710.1 | MULTI-COPPER OXIDASE |
| CAI8053711.1 | MULTI-COPPER OXIDASE |
| CAI8053712.1 | MULTI-COPPER OXIDASE |
| CAI8053713.1 | |
| CAI8053714.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8053715.1 | |
| CAI8053716.1 | |
| CAI8053717.1 | |
| CAI8053721.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8053720.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8053719.1 | HEAT SHOCK PROTEIN 70KDA |
