Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8053822.1 | |
| CAI8053814.1 | KINESIN-LIKE PROTEIN KIN-12D |
| CAI8053823.1 | CYTOCHROME C OXIDASE SUBUNIT IV |
| CAI8053824.1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE |
| CAI8053829.1 | SUBGROUP IIII AMINOTRANSFERASE |
| CAI8053827.1 | SUBGROUP IIII AMINOTRANSFERASE |
| CAI8053830.1 | SUBGROUP IIII AMINOTRANSFERASE |
| CAI8053828.1 | SUBGROUP IIII AMINOTRANSFERASE |
| CAI8053826.1 | SUBGROUP IIII AMINOTRANSFERASE |
| CAI8053825.1 | SUBGROUP IIII AMINOTRANSFERASE |
| CAI8053831.1 | SUBGROUP IIII AMINOTRANSFERASE |
| CAI8053832.1 | |
| CAI8053834.1 | HIV-INDUCED PROTEIN-7-LIKE PROTEASE |
| CAI8053833.1 | HIV-INDUCED PROTEIN-7-LIKE PROTEASE |
| CAI8053835.1 | HIV-INDUCED PROTEIN-7-LIKE PROTEASE |
| CAI8053836.1 | HIV-INDUCED PROTEIN-7-LIKE PROTEASE |
| CAI8053837.1 | DENN DOMAIN-CONTAINING PROTEIN 4 |
| CAI8053838.1 | DENN DOMAIN-CONTAINING PROTEIN 4 |
| CAI8053839.1 | |
| CAI8053840.1 | METHIONINE SYNTHASE |
| CAI8053841.1 | METHIONINE SYNTHASE |
| CAI8053842.1 | |
| CAI8053843.1 | |
| CAI8053844.1 | |
| CAI8053845.1 | |
| CAI8053846.1 | |
| CAI8053847.1 | TRANSAMIDASE |
| CAI8053848.1 | NITROGEN REGULATORY PROTEIN P-II |
| CAI8053849.1 | AMMONIUM TRANSPORTER MEP2 |
| CAI8053850.1 | |
| CAI8053851.1 | TRNA PSEUDOURIDINE SYNTHASE D |
| CAI8053852.1 | - |
| CAI8053853.1 | |
| CAI8053854.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT A |
| CAI8053856.1 | PROTEASE HTPX |
| CAI8053855.1 | PROTEASE HTPX |
| CAI8053857.1 | PROTEASE HTPX |
| CAI8053859.1 | PROTEASE HTPX |
| CAI8053858.1 | PROTEASE HTPX |
| CAI8053860.1 | MEMBRANE-ASSOCIATED PROTEIN VIPP1, CHLOROPLASTIC |
| CAI8053861.1 | XANTHINE DEHYDROGENASE SUBUNIT C-RELATED |
| CAI8053862.1 | N-ACETYLNEURAMINATE LYASE |
| CAI8053863.1 | TRANSAMIDASE |
| CAI8053864.1 | TRANSAMIDASE |
| CAI8053865.1 | |
| CAI8053866.1 | |
| CAI8053867.1 | COBALT-FACTOR III C(17)-METHYLTRANSFERASE-RELATED |
| CAI8053868.1 | COBYRINATE A,C-DIAMIDE SYNTHASE |
| CAI8053869.1 | COBYRINATE A,C-DIAMIDE SYNTHASE |
| CAI8053871.1 | PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN |
