Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8053271.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8053272.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8053273.1 | |
| CAI8053274.1 | |
| CAI8053275.1 | |
| CAI8053277.1 | ACETYLGLUCOSAMINYLTRANSFERASE |
| CAI8053276.1 | ACETYLGLUCOSAMINYLTRANSFERASE |
| CAI8053278.1 | ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN |
| CAI8053279.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8053280.1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
| CAI8053281.1 | |
| CAI8053282.1 | |
| CAI8053287.1 | REGULATOR OF CHROMOSOME CONDENSATION |
| CAI8053288.1 | REGULATOR OF CHROMOSOME CONDENSATION |
| CAI8053286.1 | REGULATOR OF CHROMOSOME CONDENSATION |
| CAI8053285.1 | REGULATOR OF CHROMOSOME CONDENSATION |
| CAI8053284.1 | REGULATOR OF CHROMOSOME CONDENSATION |
| CAI8053283.1 | REGULATOR OF CHROMOSOME CONDENSATION |
| CAI8053294.1 | REGULATOR OF CHROMOSOME CONDENSATION |
| CAI8053293.1 | REGULATOR OF CHROMOSOME CONDENSATION |
| CAI8053289.1 | REGULATOR OF CHROMOSOME CONDENSATION |
| CAI8053291.1 | REGULATOR OF CHROMOSOME CONDENSATION |
| CAI8053292.1 | REGULATOR OF CHROMOSOME CONDENSATION |
| CAI8053290.1 | REGULATOR OF CHROMOSOME CONDENSATION |
| CAI8053296.1 | REGULATOR OF CHROMOSOME CONDENSATION |
| CAI8053295.1 | REGULATOR OF CHROMOSOME CONDENSATION |
| CAI8053297.1 | |
| CAI8053298.1 | |
| CAI8053305.1 | |
| CAI8053304.1 | |
| CAI8053303.1 | |
| CAI8053302.1 | |
| CAI8053301.1 | |
| CAI8053299.1 | |
| CAI8053300.1 | |
| CAI8053307.1 | |
| CAI8053306.1 | |
| CAI8053308.1 | |
| CAI8053309.1 | |
| CAI8053310.1 | |
| CAI8053311.1 | LIPOYL SYNTHASE |
| CAI8053312.1 | DISULFIDE OXIDOREDUCTASE |
| CAI8053314.1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED |
| CAI8053315.1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED |
| CAI8053313.1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED |
| CAI8053316.1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED |
| CAI8053317.1 | DEHYDROGENASE RELATED |
| CAI8053318.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI8053322.1 | ENOLASE |
| CAI8053321.1 | ENOLASE |
