Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8054171.1 | |
| CAI8054174.1 | 30S RIBOSOMAL PROTEIN S18 |
| CAI8054173.1 | 30S RIBOSOMAL PROTEIN S18 |
| CAI8054172.1 | 30S RIBOSOMAL PROTEIN S18 |
| CAI8054176.1 | |
| CAI8054175.1 | |
| CAI8054177.1 | SINGLE-STRANDED DNA-BINDING PROTEIN |
| CAI8054178.1 | SINGLE-STRANDED DNA-BINDING PROTEIN |
| CAI8054179.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 |
| CAI8054186.1 | D-ERYTHRULOSE REDUCTASE |
| CAI8054181.1 | |
| CAI8054180.1 | |
| CAI8054187.1 | D-ERYTHRULOSE REDUCTASE |
| CAI8054182.1 | D-ERYTHRULOSE REDUCTASE |
| CAI8054188.1 | D-ERYTHRULOSE REDUCTASE |
| CAI8054184.1 | D-ERYTHRULOSE REDUCTASE |
| CAI8054183.1 | D-ERYTHRULOSE REDUCTASE |
| CAI8054185.1 | D-ERYTHRULOSE REDUCTASE |
| CAI8054189.1 | D-ERYTHRULOSE REDUCTASE |
| CAI8054190.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| CAI8054193.1 | METHIONYL-TRNA SYNTHETASE |
| CAI8054191.1 | METHIONYL-TRNA SYNTHETASE |
| CAI8054192.1 | METHIONYL-TRNA SYNTHETASE |
| CAI8054194.1 | TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER |
| CAI8054195.1 | RECBCD ENZYME SUBUNIT RECC |
| CAI8054196.1 | 37S RIBOSOMAL PROTEIN S26, MITOCHONDRIAL |
| CAI8054197.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8054198.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8054199.1 | ACETOLACTATE SYNTHASE SMALL SUBUNIT |
| CAI8054200.1 | KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL |
| CAI8054201.1 | KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL |
| CAI8054202.1 | SIMILAR TO CYSTEINE PROTEINASE |
| CAI8054203.1 | PROPROTEIN CONVERTASE P |
| CAI8054209.1 | |
| CAI8054208.1 | |
| CAI8054207.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8054206.1 | |
| CAI8054205.1 | JITTERBUG, ISOFORM N |
| CAI8054204.1 | |
| CAI8054212.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8054210.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8054211.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8054213.1 | |
| CAI8054214.1 | |
| CAI8054215.1 | MOLYBDENUM TRANSPORT SYSTEM PERMEASE PROTEIN MODB |
| CAI8054216.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8054217.1 | |
| CAI8054218.1 | AMINOMETHYLTRANSFERASE |
| CAI8054219.1 | |
| CAI8054220.1 |
