Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8054121.1 | |
| CAI8054122.1 | |
| CAI8054123.1 | |
| CAI8054127.1 | |
| CAI8054125.1 | |
| CAI8054126.1 | |
| CAI8054124.1 | |
| CAI8054129.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8054130.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8054128.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8054131.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8054132.1 | |
| CAI8054133.1 | |
| CAI8054134.1 | |
| CAI8054135.1 | |
| CAI8054136.1 | |
| CAI8054137.1 | |
| CAI8054138.1 | |
| CAI8054139.1 | |
| CAI8054140.1 | UNCHARACTERIZED |
| CAI8054141.1 | |
| CAI8054142.1 | |
| CAI8054144.1 | NEPHRIN |
| CAI8054143.1 | NEPHRIN |
| CAI8054146.1 | RNA RECOGNITION MOTIF-CONTAINING |
| CAI8054148.1 | RNA RECOGNITION MOTIF-CONTAINING |
| CAI8054147.1 | RNA RECOGNITION MOTIF-CONTAINING |
| CAI8054149.1 | RNA RECOGNITION MOTIF-CONTAINING |
| CAI8054150.1 | RNA RECOGNITION MOTIF-CONTAINING |
| CAI8054145.1 | RNA RECOGNITION MOTIF-CONTAINING |
| CAI8054151.1 | RNA RECOGNITION MOTIF-CONTAINING |
| CAI8054152.1 | RNA RECOGNITION MOTIF-CONTAINING |
| CAI8054153.1 | RNA RECOGNITION MOTIF-CONTAINING |
| CAI8054154.1 | RNA RECOGNITION MOTIF-CONTAINING |
| CAI8054157.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
| CAI8054156.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
| CAI8054155.1 | |
| CAI8054158.1 | |
| CAI8054159.1 | |
| CAI8054160.1 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED |
| CAI8054161.1 | SULFOQUINOVOSYL TRANSFERASE SQD2 |
| CAI8054162.1 | |
| CAI8054166.1 | GTP CYCLOHYDROLASE I |
| CAI8054165.1 | GTP CYCLOHYDROLASE I |
| CAI8054164.1 | GTP CYCLOHYDROLASE I |
| CAI8054163.1 | GTP CYCLOHYDROLASE I |
| CAI8054167.1 | |
| CAI8054168.1 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
| CAI8054169.1 | CYSTATHIONINE BETA-SYNTHASE |
| CAI8054170.1 | HOMOSERINE DEHYDROGENASE |
