Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8054621.1 | NADH-CYTOCHROME B5 REDUCTASE |
| CAI8054622.1 | |
| CAI8054623.1 | |
| CAI8054624.1 | GLYCOGEN SYNTHASE |
| CAI8054625.1 | GLYCOGEN SYNTHASE |
| CAI8054626.1 | |
| CAI8054627.1 | |
| CAI8054628.1 | LYSYL-TRNA SYNTHETASE |
| CAI8054629.1 | LYSYL-TRNA SYNTHETASE |
| CAI8054631.1 | LYSYL-TRNA SYNTHETASE |
| CAI8054630.1 | LYSYL-TRNA SYNTHETASE |
| CAI8054632.1 | LYSYL-TRNA SYNTHETASE |
| CAI8054633.1 | LYSYL-TRNA SYNTHETASE |
| CAI8054634.1 | LYSYL-TRNA SYNTHETASE |
| CAI8054635.1 | SERYL-TRNA SYNTHETASE |
| CAI8054636.1 | STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL |
| CAI8054638.1 | RIBOSOMAL PROTEIN S9 |
| CAI8054637.1 | RIBOSOMAL PROTEIN S9 |
| CAI8054639.1 | |
| CAI8054640.1 | 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 |
| CAI8054641.1 | METHIONINE AMINOPEPTIDASE |
| CAI8054642.1 | NUCLEOTIDE KINASE |
| CAI8054643.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8054644.1 | 50S RIBOSOMAL PROTEIN L15 |
| CAI8054647.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
| CAI8054646.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
| CAI8054645.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
| CAI8054649.1 | 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL |
| CAI8054648.1 | 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL |
| CAI8054650.1 | 40S RIBOSOMAL PROTEIN S15A |
| CAI8054651.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
| CAI8054652.1 | 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER |
| CAI8054653.1 | 50S/60S RIBOSOMAL PROTEIN L16 |
| CAI8054654.1 | 30S/40S RIBOSOMAL PROTEIN S3 |
| CAI8054655.1 | RIBOSOMAL PROTEIN S19P FAMILY MEMBER |
| CAI8054664.1 | RIBOSOMAL PROTEIN L2 |
| CAI8054663.1 | RIBOSOMAL PROTEIN L2 |
| CAI8054662.1 | RIBOSOMAL PROTEIN L2 |
| CAI8054661.1 | RIBOSOMAL PROTEIN L2 |
| CAI8054660.1 | RIBOSOMAL PROTEIN L2 |
| CAI8054659.1 | RIBOSOMAL PROTEIN L2 |
| CAI8054658.1 | RIBOSOMAL PROTEIN L2 |
| CAI8054657.1 | RIBOSOMAL PROTEIN L2 |
| CAI8054656.1 | RIBOSOMAL PROTEIN L2 |
| CAI8054665.1 | 50S RIBOSOMAL PROTEIN L3 |
| CAI8054666.1 | 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER |
| CAI8054669.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8054668.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8054667.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8054672.1 | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER |
