Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8054721.1 | |
| CAI8054723.1 | C5ORF31 |
| CAI8054724.1 | C5ORF31 |
| CAI8054722.1 | |
| CAI8054725.1 | |
| CAI8054726.1 | |
| CAI8054727.1 | |
| CAI8054728.1 | DNA HELICASE RECQ FAMILY MEMBER |
| CAI8054730.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8054731.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8054732.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8054729.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8054734.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8054733.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8054735.1 | TRANSPOSASE RV3428C-RELATED |
| CAI8054737.1 | |
| CAI8054738.1 | |
| CAI8054736.1 | |
| CAI8054739.1 | ARYLSULFATASE FAMILY MEMBER |
| CAI8054741.1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN |
| CAI8054740.1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN |
| CAI8054742.1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN |
| CAI8054743.1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN |
| CAI8054746.1 | SEC10 |
| CAI8054747.1 | SEC10 |
| CAI8054748.1 | SEC10 |
| CAI8054745.1 | SEC10 |
| CAI8054744.1 | SEC10 |
| CAI8054749.1 | SEC10 |
| CAI8054751.1 | SEC10 |
| CAI8054750.1 | SEC10 |
| CAI8054752.1 | SEC10 |
| CAI8054753.1 | SEC10 |
| CAI8054754.1 | WD40 REPEAT PROTEIN |
| CAI8054755.1 | WD40 REPEAT PROTEIN |
| CAI8054756.1 | |
| CAI8054757.1 | BERNARDINELLI-SEIP CONGENITAL LIPODYSTROPHY 2 HOMOLOG BSCL2 PROTEIN |
| CAI8054758.1 | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED |
| CAI8054759.1 | |
| CAI8054760.1 | |
| CAI8054761.1 | CYTOKINE RECEPTOR |
| CAI8054763.1 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8054764.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8054765.1 | CYTOKINE RECEPTOR |
| CAI8054762.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8054766.1 | CYTOKINE RECEPTOR |
| CAI8054767.1 | CYTOKINE RECEPTOR |
| CAI8054768.1 | |
| CAI8054769.1 | N-ACETYLGALACTOSAMINYLTRANSFERASE |
| CAI8054771.1 | SPLICING FACTOR 3B, SUBUNIT 1-RELATED |
