Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8054821.1 | TREHALOSE 6-PHOSPHATE PHOSPHATASE |
| CAI8054822.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8054823.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8054824.1 | MANNOSYLTRANSFERASE YKCB-RELATED |
| CAI8054825.1 | PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL |
| CAI8054826.1 | PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL |
| CAI8054827.1 | PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL |
| CAI8054828.1 | CYTOCHROME C OXIDASE, SUBUNIT II |
| CAI8054829.1 | CYTOCHROME C OXIDASE SUBUNIT 1 |
| CAI8054830.1 | CYTOCHROME C OXIDASE SUBUNIT III |
| CAI8054831.1 | |
| CAI8054832.1 | |
| CAI8054833.1 | 39S RIBOSOMAL PROTEIN L20 |
| CAI8054834.1 | TRANSLATION INITIATION FACTOR IF-3 |
| CAI8054835.1 | TWO-COMPONENT HISTIDINE PROTEIN KINASE |
| CAI8054836.1 | DNA-BINDING PROTEIN HU |
| CAI8054837.1 | DNA-BINDING PROTEIN HU |
| CAI8054838.1 | DNA-BINDING PROTEIN HU |
| CAI8054839.1 | |
| CAI8054840.1 | THREONINE-TRNA LIGASE |
| CAI8054841.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8054842.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8054843.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8054844.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI8054847.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8054846.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8054845.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8054848.1 | F420H(2)-DEPENDENT QUINONE REDUCTASE RV1261C |
| CAI8054849.1 | LIPOYL SYNTHASE |
| CAI8054850.1 | |
| CAI8054851.1 | PROTEIN SIDEKICK |
| CAI8054852.1 | |
| CAI8054853.1 | |
| CAI8054854.1 | |
| CAI8054855.1 | |
| CAI8054860.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8054859.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8054857.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8054858.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8054856.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8054861.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8054862.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8054866.1 | FIBRILLIN-RELATED |
| CAI8054868.1 | FIBRILLIN-RELATED |
| CAI8054869.1 | FIBRILLIN-RELATED |
| CAI8054865.1 | FIBRILLIN-RELATED |
| CAI8054867.1 | FIBRILLIN-RELATED |
| CAI8054864.1 | FIBRILLIN-RELATED |
| CAI8054863.1 | FIBRILLIN-RELATED |
| CAI8054870.1 | CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 |
