About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50%31,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8054770.1SPLICING FACTOR 3B, SUBUNIT 1-RELATED
CAI8054775.1SPLICING FACTOR 3B, SUBUNIT 1-RELATED
CAI8054774.1SPLICING FACTOR 3B, SUBUNIT 1-RELATED
CAI8054772.1SPLICING FACTOR 3B, SUBUNIT 1-RELATED
CAI8054776.1SPLICING FACTOR 3B, SUBUNIT 1-RELATED
CAI8054773.1SPLICING FACTOR 3B, SUBUNIT 1-RELATED
CAI8054777.1SPLICING FACTOR 3B, SUBUNIT 1-RELATED
CAI8054778.1SPLICING FACTOR 3B, SUBUNIT 1-RELATED
CAI8054779.1NICOTINAMIDE-NUCLEOTIDE AMIDOHYDROLASE PNCC
CAI8054780.1D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090)
CAI8054781.1ALKANESULFONATE MONOOXYGENASE
CAI8054782.1AMINOTRANSFERASE
CAI8054783.1AMINOTRANSFERASE
CAI8054784.1GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED
CAI8054785.1GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED
CAI8054786.1UNCHARACTERIZED PROTEIN YVCK-RELATED
CAI8054787.1CYSTEINYL-TRNA SYNTHETASE
CAI8054788.1CYSTEINYL-TRNA SYNTHETASE
CAI8054792.12-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE, CHLOROPLASTIC
CAI8054790.12-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE, CHLOROPLASTIC
CAI8054791.12-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE, CHLOROPLASTIC
CAI8054789.12-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC
CAI8054793.1
CAI8054794.1ATP-BINDING CASSETTE SUB-FAMILY B
CAI8054795.1-
CAI8054796.1
CAI8054797.1ENOLASE SUPERFAMILY, MANDELATE RACEMASE
CAI8054798.13-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED
CAI8054799.1PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE
CAI8054800.1ACETYLORNITHINE DEACETYLASE
CAI8054801.1UDP/ADP-SUGAR PYROPHOSPHATASE
CAI8054802.1NAD KINASE
CAI8054803.1NADH DEHYDROGENASE
CAI8054804.1NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4
CAI8054805.1FARNESYL DIPHOSPHATE SYNTHASE
CAI8054806.1
CAI8054807.1INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE
CAI8054808.1FES CLUSTER ASSEMBLY PROTEIN SUF
CAI8054809.1ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC
CAI8054810.1PROTEIN ABCI7, CHLOROPLASTIC
CAI8054811.1IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG
CAI8054812.1WINGED HELIX-TURN-HELIX TRANSCRIPTIONAL REGULATOR, RRF2 FAMILY
CAI8054813.1FERREDOXIN-RELATED
CAI8054814.1CYSTEINE DESULFURASE
CAI8054815.1CYSTEINE DESULFURASE
CAI8054816.1
CAI8054817.1CELL DIVISION PROTEIN FTSZ-RELATED
CAI8054818.1DEHYDROGENASES, SHORT CHAIN
CAI8054819.1XANTHINE DEHYDROGENASE
CAI8054820.1XANTHINE DEHYDROGENASE
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