Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8054971.1 | |
| CAI8054972.1 | PROTEIN SIDEKICK |
| CAI8054973.1 | |
| CAI8054974.1 | |
| CAI8054975.1 | |
| CAI8054976.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8054977.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8054978.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8054979.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8054980.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED |
| CAI8054981.1 | |
| CAI8054982.1 | |
| CAI8054983.1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| CAI8054984.1 | G PROTEIN-COUPLED RECEPTOR 157-RELATED |
| CAI8054985.1 | G PROTEIN-COUPLED RECEPTOR 157-RELATED |
| CAI8054986.1 | G PROTEIN-COUPLED RECEPTOR 157-RELATED |
| CAI8054987.1 | G PROTEIN-COUPLED RECEPTOR 157-RELATED |
| CAI8054988.1 | |
| CAI8054989.1 | PROLINE OXIDASE |
| CAI8054990.1 | GABA-B RECEPTOR |
| CAI8054992.1 | NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED |
| CAI8054991.1 | NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED |
| CAI8054994.1 | KINETOCHORE PROTEIN NDC80 |
| CAI8054993.1 | |
| CAI8054995.1 | KINETOCHORE PROTEIN NDC80 |
| CAI8054996.1 | KINETOCHORE PROTEIN NDC80 |
| CAI8054997.1 | |
| CAI8055001.1 | |
| CAI8055000.1 | |
| CAI8054999.1 | |
| CAI8054998.1 | UNCHARACTERIZED |
| CAI8055003.1 | |
| CAI8055002.1 | |
| CAI8055004.1 | |
| CAI8055005.1 | GREB1-RELATED |
| CAI8055006.1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| CAI8055007.1 | OSJNBA0091C07.3 PROTEIN |
| CAI8055008.1 | |
| CAI8055009.1 | |
| CAI8055012.1 | UNCHARACTERIZED |
| CAI8055011.1 | UNCHARACTERIZED |
| CAI8055010.1 | UNCHARACTERIZED |
| CAI8055013.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8055014.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8055015.1 | |
| CAI8055016.1 | |
| CAI8055017.1 | |
| CAI8055018.1 | HISTONE H3 |
| CAI8055019.1 | |
| CAI8055020.1 | TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA |
