Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8055471.1 | |
| CAI8055473.1 | BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED |
| CAI8055472.1 | BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED |
| CAI8055474.1 | BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED |
| CAI8055475.1 | ADP RIBOSYLATION FACTOR-RELATED |
| CAI8055476.1 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
| CAI8055478.1 | |
| CAI8055477.1 | |
| CAI8055481.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8055482.1 | |
| CAI8055480.1 | |
| CAI8055479.1 | |
| CAI8055483.1 | MYOSIN |
| CAI8055484.1 | MYOSIN |
| CAI8055485.1 | |
| CAI8055486.1 | PR DOMAIN ZINC FINGER PROTEIN |
| CAI8055487.1 | PR DOMAIN ZINC FINGER PROTEIN |
| CAI8055488.1 | ZINC FINGER PROTEIN |
| CAI8055489.1 | ZINC FINGER PROTEIN |
| CAI8055490.1 | ZINC FINGER PROTEIN |
| CAI8055491.1 | PR DOMAIN ZINC FINGER PROTEIN |
| CAI8055492.1 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |
| CAI8055493.1 | ZINC FINGER PROTEIN |
| CAI8055494.1 | KRAB DOMAIN C2H2 ZINC FINGER |
| CAI8055495.1 | ZINC FINGER PROTEIN 142 |
| CAI8055496.1 | PR DOMAIN ZINC FINGER PROTEIN |
| CAI8055497.1 | |
| CAI8055498.1 | |
| CAI8055501.1 | |
| CAI8055502.1 | |
| CAI8055500.1 | |
| CAI8055499.1 | |
| CAI8055504.1 | |
| CAI8055503.1 | |
| CAI8055505.1 | ERGOSTEROL BIOSYNTHETIC PROTEIN 28-RELATED |
| CAI8055506.1 | ERGOSTEROL BIOSYNTHETIC PROTEIN 28-RELATED |
| CAI8055508.1 | |
| CAI8055507.1 | |
| CAI8055509.1 | |
| CAI8055510.1 | |
| CAI8055511.1 | TRANSCRIPTIONAL REGULATOR |
| CAI8055512.1 | TRANSCRIPTIONAL REGULATOR |
| CAI8055513.1 | ARRESTIN DOMAIN-CONTAINING PROTEIN D |
| CAI8055514.1 | CB1 CANNABINOID RECEPTOR-INTERACTING PROTEIN 1 |
| CAI8055515.1 | TESTIS-SPECIFIC EXPRESSED PROTEIN 55 |
| CAI8055516.1 | |
| CAI8055519.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 8 |
| CAI8055518.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 8 |
| CAI8055517.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 8 |
| CAI8055520.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 8 |
