Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8055565.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8055573.1 | MYOTUBULARIN-RELATED |
| CAI8055572.1 | MYOTUBULARIN-RELATED |
| CAI8055575.1 | MYOTUBULARIN-RELATED |
| CAI8055574.1 | MYOTUBULARIN-RELATED |
| CAI8055576.1 | MYOTUBULARIN-RELATED |
| CAI8055577.1 | |
| CAI8055578.1 | ENDONUCLEASE-RELATED |
| CAI8055582.1 | |
| CAI8055580.1 | |
| CAI8055579.1 | |
| CAI8055581.1 | |
| CAI8055583.1 | |
| CAI8055584.1 | |
| CAI8055587.1 | |
| CAI8055586.1 | |
| CAI8055588.1 | |
| CAI8055585.1 | |
| CAI8055589.1 | |
| CAI8055591.1 | NUCLEAR PORE COMPLEX PROTEIN NUP160 |
| CAI8055590.1 | NUCLEAR PORE COMPLEX PROTEIN NUP160 |
| CAI8055592.1 | |
| CAI8055593.1 | LEUCINE-SPECIFIC-BINDING PROTEIN |
| CAI8055594.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8055595.1 | DIHYDROXY-ACID DEHYDRATASE DAD |
| CAI8055596.1 | DIHYDROXY-ACID DEHYDRATASE DAD |
| CAI8055604.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8055605.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8055606.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8055607.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8055611.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8055608.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8055610.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8055609.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8055612.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8055601.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8055602.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8055603.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8055600.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8055599.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8055597.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8055598.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8055613.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI8055614.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI8055615.1 | ALCOHOL DEHYDROGENASE |
| CAI8055616.1 | QUEUINE TRNA-RIBOSYLTRANSFERASE |
| CAI8055617.1 | |
| CAI8055618.1 | CYCLOINULO-OLIGOSACCHARIDE FRUCTANOTRANSFERASE-RELATED |
| CAI8055619.1 | DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED |
| CAI8055620.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
