Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8055521.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 8 |
| CAI8055522.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 8 |
| CAI8055526.1 | E3 UBIQUITIN-PROTEIN LIGASE RNF8 |
| CAI8055525.1 | E3 UBIQUITIN-PROTEIN LIGASE RNF8 |
| CAI8055524.1 | E3 UBIQUITIN-PROTEIN LIGASE RNF8 |
| CAI8055523.1 | |
| CAI8055528.1 | PROTEIN SIDEKICK |
| CAI8055527.1 | |
| CAI8055530.1 | CENTROMERE/KINETOCHORE PROTEIN ZW10 |
| CAI8055529.1 | UPF0315 PROTEIN-RELATED |
| CAI8055531.1 | |
| CAI8055532.1 | |
| CAI8055534.1 | |
| CAI8055533.1 | |
| CAI8055537.1 | CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED |
| CAI8055536.1 | CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED |
| CAI8055535.1 | CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED |
| CAI8055538.1 | |
| CAI8055539.1 | |
| CAI8055545.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8055544.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8055543.1 | RIBOSOMAL PROTEIN S6 KINASE |
| CAI8055542.1 | RIBOSOMAL PROTEIN S6 KINASE |
| CAI8055541.1 | RIBOSOMAL PROTEIN S6 KINASE |
| CAI8055540.1 | RIBOSOMAL PROTEIN S6 KINASE |
| CAI8055546.1 | RIBOSOMAL PROTEIN S6 KINASE |
| CAI8055547.1 | PROTEIN KINASE C, MU |
| CAI8055548.1 | PROTEIN KINASE C, MU |
| CAI8055549.1 | MRNA EXPORT FACTOR AND BUB3 |
| CAI8055551.1 | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED |
| CAI8055550.1 | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED |
| CAI8055555.1 | SIMILAR TO CDNA SEQUENCE BC052040 |
| CAI8055553.1 | SIMILAR TO CDNA SEQUENCE BC052040 |
| CAI8055554.1 | SIMILAR TO CDNA SEQUENCE BC052040 |
| CAI8055552.1 | SIMILAR TO CDNA SEQUENCE BC052040 |
| CAI8055558.1 | BARDET-BIEDL SYNDROME 10 PROTEIN |
| CAI8055557.1 | BARDET-BIEDL SYNDROME 10 PROTEIN |
| CAI8055556.1 | BARDET-BIEDL SYNDROME 10 PROTEIN |
| CAI8055559.1 | |
| CAI8055560.1 | BARDET-BIEDL SYNDROME 10 PROTEIN |
| CAI8055561.1 | |
| CAI8055562.1 | |
| CAI8055563.1 | |
| CAI8055564.1 | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS |
| CAI8055570.1 | MYOTUBULARIN-RELATED |
| CAI8055571.1 | MYOTUBULARIN-RELATED |
| CAI8055569.1 | MYOTUBULARIN-RELATED |
| CAI8055568.1 | MYOTUBULARIN-RELATED |
| CAI8055567.1 | MYOTUBULARIN-RELATED |
| CAI8055566.1 | MYOTUBULARIN-RELATED |
