Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8055621.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI8055622.1 | |
| CAI8055623.1 | |
| CAI8055624.1 | ARYLSULFATASE K |
| CAI8055625.1 | |
| CAI8055626.1 | HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED |
| CAI8055627.1 | |
| CAI8055628.1 | |
| CAI8055629.1 | |
| CAI8055630.1 | METHANETHIOL OXIDASE |
| CAI8055631.1 | |
| CAI8055632.1 | GLUCOKINASE REGULATORY PROTEIN |
| CAI8055638.1 | FIBRILLIN-RELATED |
| CAI8055635.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8055636.1 | PROTEIN BARK BEETLE |
| CAI8055634.1 | PROTEIN BARK BEETLE |
| CAI8055637.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8055639.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8055633.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8055640.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI8055641.1 | BARDET-BIEDL SYNDROME 2 PROTEIN |
| CAI8055642.1 | BARDET-BIEDL SYNDROME 2 PROTEIN |
| CAI8055643.1 | BARDET-BIEDL SYNDROME 2 PROTEIN |
| CAI8055644.1 | BARDET-BIEDL SYNDROME 2 PROTEIN |
| CAI8055645.1 | BARDET-BIEDL SYNDROME 2 PROTEIN |
| CAI8055647.1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| CAI8055646.1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED |
| CAI8055648.1 | |
| CAI8055649.1 | |
| CAI8055653.1 | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 |
| CAI8055655.1 | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 |
| CAI8055654.1 | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 |
| CAI8055652.1 | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 |
| CAI8055656.1 | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 |
| CAI8055650.1 | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 |
| CAI8055657.1 | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 |
| CAI8055651.1 | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 |
| CAI8055658.1 | |
| CAI8055659.1 | |
| CAI8055660.1 | |
| CAI8055663.1 | |
| CAI8055662.1 | |
| CAI8055661.1 | |
| CAI8055664.1 | |
| CAI8055665.1 | |
| CAI8055668.1 | NUCLEOPORIN-LIKE PROTEIN 2 |
| CAI8055669.1 | NUCLEOPORIN-LIKE PROTEIN 2 |
| CAI8055670.1 | NUCLEOPORIN-LIKE PROTEIN 2 |
| CAI8055667.1 | NUCLEOPORIN-LIKE PROTEIN 2 |
| CAI8055666.1 | NUCLEOPORIN-LIKE PROTEIN 2 |
