Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8055721.1 | |
| CAI8055722.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 51 |
| CAI8055724.1 | |
| CAI8055723.1 | |
| CAI8055726.1 | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING |
| CAI8055725.1 | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING |
| CAI8055727.1 | |
| CAI8055730.1 | VESICULAR-FUSION PROTEIN NSF |
| CAI8055729.1 | VESICULAR-FUSION PROTEIN NSF |
| CAI8055728.1 | VESICULAR-FUSION PROTEIN NSF |
| CAI8055731.1 | RFX TRANSCRIPTION FACTOR FAMILY |
| CAI8055732.1 | RFX TRANSCRIPTION FACTOR FAMILY |
| CAI8055734.1 | RFX TRANSCRIPTION FACTOR FAMILY |
| CAI8055733.1 | RFX TRANSCRIPTION FACTOR FAMILY |
| CAI8055735.1 | RFX TRANSCRIPTION FACTOR FAMILY |
| CAI8055736.1 | |
| CAI8055737.1 | RFX TRANSCRIPTION FACTOR FAMILY |
| CAI8055738.1 | |
| CAI8055739.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| CAI8055740.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| CAI8055741.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| CAI8055743.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| CAI8055742.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| CAI8055744.1 | |
| CAI8055745.1 | HYALURONIC ACID-BINDING PROTEIN 4 |
| CAI8055747.1 | - |
| CAI8055746.1 | DISCS LARGE |
| CAI8055750.1 | UPF0600 PROTEIN C5ORF51 |
| CAI8055749.1 | UPF0600 PROTEIN C5ORF51 |
| CAI8055748.1 | UPF0600 PROTEIN C5ORF51 |
| CAI8055752.1 | |
| CAI8055753.1 | |
| CAI8055751.1 | |
| CAI8055754.1 | |
| CAI8055755.1 | |
| CAI8055756.1 | |
| CAI8055757.1 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN |
| CAI8055758.1 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN |
| CAI8055759.1 | RIBOSOMAL PROTEIN L39E |
| CAI8055760.1 | GUANINE NUCLEOTIDE EXCHANGE C9ORF72 |
| CAI8055761.1 | |
| CAI8055762.1 | |
| CAI8055763.1 | |
| CAI8055764.1 | |
| CAI8055765.1 | |
| CAI8055766.1 | |
| CAI8055767.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7 |
| CAI8055768.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7 |
| CAI8055769.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7 |
| CAI8055770.1 | ZINC FINGER PROTEIN 330 |
