Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8055820.1 | |
| CAI8055822.1 | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 |
| CAI8055823.1 | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 |
| CAI8055824.1 | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 |
| CAI8055825.1 | |
| CAI8055826.1 | |
| CAI8055829.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8055828.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8055827.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8055832.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8055831.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8055830.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8055833.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8055834.1 | |
| CAI8055836.1 | |
| CAI8055835.1 | |
| CAI8055839.1 | |
| CAI8055838.1 | |
| CAI8055837.1 | |
| CAI8055840.1 | |
| CAI8055841.1 | |
| CAI8055843.1 | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED |
| CAI8055842.1 | CCAAT/ENHANCER BINDING PROTEIN |
| CAI8055844.1 | ALPHA-AMYLASE FAMILY MEMBER |
| CAI8055845.1 | ALPHA-AMYLASE FAMILY MEMBER |
| CAI8055846.1 | |
| CAI8055849.1 | HOOK PROTEINS |
| CAI8055848.1 | HOOK PROTEINS |
| CAI8055847.1 | HOOK PROTEINS |
| CAI8055850.1 | HOOK PROTEINS |
| CAI8055852.1 | HOOK PROTEINS |
| CAI8055851.1 | HOOK PROTEINS |
| CAI8055853.1 | HOOK PROTEINS |
| CAI8055854.1 | HOOK PROTEINS |
| CAI8055855.1 | |
| CAI8055860.1 | FERMITIN 2-RELATED |
| CAI8055859.1 | FERMITIN 2-RELATED |
| CAI8055858.1 | FERMITIN 2-RELATED |
| CAI8055857.1 | FERMITIN 2-RELATED |
| CAI8055856.1 | FERMITIN 2-RELATED |
| CAI8055861.1 | FERMITIN 2-RELATED |
| CAI8055862.1 | FERMITIN 2-RELATED |
| CAI8055863.1 | FERMITIN 2-RELATED |
| CAI8055864.1 | FERMITIN 2-RELATED |
| CAI8055865.1 | |
| CAI8055866.1 | PHOSPHODIESTERASE HL |
| CAI8055867.1 | |
| CAI8055868.1 | |
| CAI8055870.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S33 |
| CAI8055869.1 |
