Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8055871.1 | SMC5-SMC6 COMPLEX LOCALIZATION FACTOR 2 |
| CAI8055872.1 | TRANSLOCATION PROTEIN SEC62 |
| CAI8055873.1 | CLASS IV SAM-BINDING METHYLTRANSFERASE-RELATED |
| CAI8055876.1 | PR DOMAIN ZINC FINGER PROTEIN |
| CAI8055875.1 | PR DOMAIN ZINC FINGER PROTEIN |
| CAI8055874.1 | PR DOMAIN ZINC FINGER PROTEIN |
| CAI8055877.1 | TRANSCRIPTION INITIATION FACTOR IIB-RELATED |
| CAI8055878.1 | TRANSCRIPTION INITIATION FACTOR IIB-RELATED |
| CAI8055879.1 | |
| CAI8055882.1 | TESTOSTERONE-REGULATED PROTEIN RP2 |
| CAI8055881.1 | TESTOSTERONE-REGULATED PROTEIN RP2 |
| CAI8055880.1 | TESTOSTERONE-REGULATED PROTEIN RP2 |
| CAI8055883.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G |
| CAI8055884.1 | |
| CAI8055885.1 | |
| CAI8055886.1 | |
| CAI8055889.1 | CLUSTERIN ASSOCIATED PROTEIN 1 |
| CAI8055888.1 | CLUSTERIN ASSOCIATED PROTEIN 1 |
| CAI8055887.1 | CLUSTERIN ASSOCIATED PROTEIN 1 |
| CAI8055890.1 | CLUSTERIN ASSOCIATED PROTEIN 1 |
| CAI8055891.1 | CLUSTERIN ASSOCIATED PROTEIN 1 |
| CAI8055892.1 | CLUSTERIN ASSOCIATED PROTEIN 1 |
| CAI8055893.1 | CLUSTERIN ASSOCIATED PROTEIN 1 |
| CAI8055896.1 | TRANSMEMBRANE PROTEIN 249 |
| CAI8055895.1 | TRANSMEMBRANE PROTEIN 249 |
| CAI8055894.1 | |
| CAI8055897.1 | TRANSMEMBRANE PROTEIN 249 |
| CAI8055899.1 | ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN-CONTAINING PROTEIN |
| CAI8055898.1 | ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN-CONTAINING PROTEIN |
| CAI8055900.1 | ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN-CONTAINING PROTEIN |
| CAI8055901.1 | ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN-CONTAINING PROTEIN |
| CAI8055902.1 | ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN-CONTAINING PROTEIN |
| CAI8055903.1 | 60 KDA RIBONUCLEOPROTEIN SSA/RO |
| CAI8055904.1 | OUTER DENSE FIBER OF SPERM TAILS 2 |
| CAI8055905.1 | |
| CAI8055907.1 | 30S RIBOSOMAL PROTEIN S16 |
| CAI8055906.1 | 30S RIBOSOMAL PROTEIN S16 |
| CAI8055908.1 | SYNDROMES PUTATIVE CHAPERONIN-RELATED |
| CAI8055909.1 | |
| CAI8055910.1 | SYNDROMES PUTATIVE CHAPERONIN-RELATED |
| CAI8055912.1 | SYNDROMES PUTATIVE CHAPERONIN-RELATED |
| CAI8055911.1 | SYNDROMES PUTATIVE CHAPERONIN-RELATED |
| CAI8055913.1 | |
| CAI8055914.1 | GPI-ANCHOR TRANSAMIDASE |
| CAI8055915.1 | GPI-ANCHOR TRANSAMIDASE |
| CAI8055917.1 | |
| CAI8055916.1 | |
| CAI8055918.1 | DENTIN MATRIX PROTEIN 4 PROTEIN FAM20 |
| CAI8055919.1 | ZINC FINGER SWIM DOMAIN-CONTAINING PROTEIN 7 |
| CAI8055921.1 | 40S RIBOSOMAL PROTEIN S26 |
