Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8056017.1 | |
| CAI8056021.1 | LEUCINE-RICH REPEAT, ISOFORM F-RELATED |
| CAI8056024.1 | LEUCINE-RICH REPEAT, ISOFORM F-RELATED |
| CAI8056016.1 | RETINOL DEHYDROGENASE |
| CAI8056025.1 | |
| CAI8056027.1 | CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10 |
| CAI8056028.1 | CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10 |
| CAI8056026.1 | CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10 |
| CAI8056029.1 | |
| CAI8056030.1 | |
| CAI8056031.1 | |
| CAI8056033.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8056032.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8056034.1 | |
| CAI8056035.1 | |
| CAI8056036.1 | |
| CAI8056037.1 | |
| CAI8056042.1 | TITIN |
| CAI8056041.1 | TITIN |
| CAI8056043.1 | PROTEIN SIDEKICK |
| CAI8056040.1 | PROTEIN SIDEKICK |
| CAI8056038.1 | PROTEIN SIDEKICK |
| CAI8056039.1 | PROTEIN SIDEKICK |
| CAI8056047.1 | PROTEIN SIDEKICK |
| CAI8056046.1 | PROTEIN SIDEKICK |
| CAI8056045.1 | PROTEIN SIDEKICK |
| CAI8056044.1 | PROTEIN SIDEKICK |
| CAI8056048.1 | |
| CAI8056049.1 | CONTACTIN 5 |
| CAI8056050.1 | PROTEIN SIDEKICK |
| CAI8056051.1 | CONTACTIN 5 |
| CAI8056052.1 | |
| CAI8056053.1 | DNA-DIRECTED RNA POLYMERASES I, II, AND III |
| CAI8056055.1 | ANKYRIN REPEAT PROTEIN |
| CAI8056054.1 | ANKYRIN REPEAT CONTAINING |
| CAI8056057.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8056056.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8056062.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8056063.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8056060.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8056061.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8056059.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8056058.1 | |
| CAI8056064.1 | GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1 |
| CAI8056065.1 | |
| CAI8056066.1 | |
| CAI8056067.1 | |
| CAI8056071.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8056070.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8056069.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
