Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8056121.1 | |
| CAI8056122.1 | FLAP ENDONUCLEASE XNI |
| CAI8056123.1 | PLEXIN |
| CAI8056125.1 | PLEXIN |
| CAI8056124.1 | |
| CAI8056126.1 | |
| CAI8056127.1 | PLEXIN |
| CAI8056128.1 | PLEXIN |
| CAI8056129.1 | |
| CAI8056130.1 | PLEXIN |
| CAI8056131.1 | PLEXIN |
| CAI8056132.1 | |
| CAI8056133.1 | ENDO-ALPHA-1,2-MANNOSIDASE |
| CAI8056135.1 | |
| CAI8056134.1 | |
| CAI8056138.1 | THADA/DEATH RECEPTOR INTERACTING PROTEIN |
| CAI8056137.1 | |
| CAI8056136.1 | |
| CAI8056139.1 | THADA/DEATH RECEPTOR INTERACTING PROTEIN |
| CAI8056140.1 | THADA/DEATH RECEPTOR INTERACTING PROTEIN |
| CAI8056141.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8056142.1 | PROTEIN DISPATCHED HOMOLOG 3 |
| CAI8056143.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8056144.1 | |
| CAI8056145.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8056146.1 | PROTEIN CBG26694 |
| CAI8056147.1 | 5-OXOPROLINASE RELATED |
| CAI8056148.1 | 5-OXOPROLINASE RELATED |
| CAI8056149.1 | 5-OXOPROLINASE RELATED |
| CAI8056150.1 | 5-OXOPROLINASE RELATED |
| CAI8056151.1 | |
| CAI8056152.1 | PHOSPHORYN, PUTATIVE-RELATED-RELATED |
| CAI8056153.1 | |
| CAI8056154.1 | MOLYBDOPTERIN SYNTHASE SULFUR CARRIER SUBUNIT |
| CAI8056155.1 | RIBOSOME MATURATION FACTOR RIMM |
| CAI8056156.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI8056157.1 | PROTEASE HTPX |
| CAI8056158.1 | ENOLASE SUPERFAMILY, MANDELATE RACEMASE |
| CAI8056159.1 | BLR7761 PROTEIN |
| CAI8056160.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8056161.1 | PHP DOMAIN PROTEIN |
| CAI8056162.1 | MONOACYLGLYCEROL LIPASE |
| CAI8056163.1 | XYLOGLUCANASE (EUROFUNG) |
| CAI8056164.1 | |
| CAI8056165.1 | |
| CAI8056166.1 | SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM |
| CAI8056167.1 | ATP7, ISOFORM B |
| CAI8056168.1 | ATP7, ISOFORM B |
| CAI8056169.1 | ATP7, ISOFORM B |
| CAI8056170.1 | ANTITOXIN HIGA-1 |
