Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8056222.1 | |
| CAI8056221.1 | |
| CAI8056223.1 | |
| CAI8056224.1 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
| CAI8056225.1 | |
| CAI8056226.1 | SULFOQUINOVOSYL TRANSFERASE SQD2 |
| CAI8056227.1 | SULFOQUINOVOSYL TRANSFERASE SQD2 |
| CAI8056228.1 | COV-LIKE PROTEIN 1 |
| CAI8056229.1 | METALLOPHOSPHOESTERASE, CALCINEURIN SUPERFAMILY |
| CAI8056230.1 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED |
| CAI8056231.1 | DIACYLGLYCEROL KINASE |
| CAI8056232.1 | |
| CAI8056233.1 | GLYOXALASE FAMILY PROTEIN |
| CAI8056234.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI8056235.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8056236.1 | NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED |
| CAI8056237.1 | ENDORIBONUCLEASE LACTB2 |
| CAI8056240.1 | C2 DOMAIN-CONTAINING PROTEIN |
| CAI8056239.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| CAI8056238.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| CAI8056242.1 | YES-ASSOCIATED PROTEIN YAP1 FAMILY MEMBER |
| CAI8056241.1 | YES-ASSOCIATED PROTEIN YAP1 FAMILY MEMBER |
| CAI8056243.1 | |
| CAI8056244.1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| CAI8056245.1 | |
| CAI8056246.1 | PHOSPHOENOLPYRUVATE CARBOXYKINASE |
| CAI8056247.1 | HEAT SHOCK FACTOR 2-BINDING PROTEIN |
| CAI8056248.1 | LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED |
| CAI8056249.1 | LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED |
| CAI8056250.1 | DIGEORGE SYNDROME CRITICAL REGION 6 DGCR6 FAMILY MEMBER |
| CAI8056251.1 | DIGEORGE SYNDROME CRITICAL REGION 6 DGCR6 FAMILY MEMBER |
| CAI8056252.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8056254.1 | |
| CAI8056255.1 | |
| CAI8056253.1 | |
| CAI8056257.1 | |
| CAI8056256.1 | |
| CAI8056258.1 | |
| CAI8056259.1 | |
| CAI8056265.1 | |
| CAI8056263.1 | |
| CAI8056264.1 | |
| CAI8056261.1 | |
| CAI8056262.1 | |
| CAI8056260.1 | |
| CAI8056266.1 | |
| CAI8056267.1 | |
| CAI8056268.1 | |
| CAI8056269.1 | |
| CAI8056270.1 |
