Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8056368.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8056375.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8056373.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8056372.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8056374.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8056377.1 | DNA REPLICATION AND REPAIR PROTEIN RECF |
| CAI8056378.1 | DNA REPLICATION AND REPAIR PROTEIN RECF |
| CAI8056376.1 | |
| CAI8056379.1 | DNA POLYMERASE III SUBUNIT BETA |
| CAI8056380.1 | DNA POLYMERASE III SUBUNIT BETA |
| CAI8056381.1 | CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA |
| CAI8056382.1 | 30S RIBOSOMAL PROTEIN S20 |
| CAI8056384.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8056383.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8056387.1 | FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE |
| CAI8056386.1 | FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE |
| CAI8056385.1 | ENDONUCLEASE 8 |
| CAI8056388.1 | METHYLTRANSFERASE |
| CAI8056390.1 | METHYLTRANSFERASE |
| CAI8056389.1 | METHYLTRANSFERASE |
| CAI8056391.1 | METHYLTRANSFERASE |
| CAI8056392.1 | METHYLTRANSFERASE |
| CAI8056393.1 | CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED |
| CAI8056394.1 | METHYLTRANSFERASE |
| CAI8056395.1 | ENDORIBONUCLEASE-RELATED |
| CAI8056396.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8056397.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8056398.1 | HOMOSERINE O-ACETYLTRANSFERASE |
| CAI8056404.1 | HOMOSERINE O-ACETYLTRANSFERASE |
| CAI8056403.1 | HOMOSERINE O-ACETYLTRANSFERASE |
| CAI8056401.1 | HOMOSERINE O-ACETYLTRANSFERASE |
| CAI8056402.1 | HOMOSERINE O-ACETYLTRANSFERASE |
| CAI8056400.1 | HOMOSERINE O-ACETYLTRANSFERASE |
| CAI8056399.1 | HOMOSERINE O-ACETYLTRANSFERASE |
| CAI8056405.1 | HOMOSERINE O-ACETYLTRANSFERASE |
| CAI8056406.1 | HOMOSERINE O-ACETYLTRANSFERASE |
| CAI8056407.1 | HISTIDINOL-PHOSPHATE AMINOTRANSFERASE 2 |
| CAI8056408.1 | DIHYDRODIPICOLINATE REDUCTASE |
| CAI8056409.1 | EXODEOXYRIBONUCLEASE 7 LARGE SUBUNIT |
| CAI8056410.1 | EXODEOXYRIBONUCLEASE 7 LARGE SUBUNIT |
| CAI8056415.1 | EXODEOXYRIBONUCLEASE 7 LARGE SUBUNIT |
| CAI8056414.1 | EXODEOXYRIBONUCLEASE 7 LARGE SUBUNIT |
| CAI8056411.1 | EXODEOXYRIBONUCLEASE 7 LARGE SUBUNIT |
| CAI8056413.1 | EXODEOXYRIBONUCLEASE 7 LARGE SUBUNIT |
| CAI8056412.1 | EXODEOXYRIBONUCLEASE 7 LARGE SUBUNIT |
| CAI8056416.1 | EXODEOXYRIBONUCLEASE 7 LARGE SUBUNIT |
| CAI8056417.1 | OXIDOREDUCTASE, ALDO/KETO REDUCTASE FAMILY PROTEIN |
| CAI8056418.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED |
| CAI8056419.1 | 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED |
| CAI8056420.1 | NAD KINASE |
