Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8056421.1 | |
| CAI8056422.1 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A |
| CAI8056423.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8056424.1 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF |
| CAI8056425.1 | ABC TRANSPORTER ATP-BINDING PROTEIN ALBC-RELATED |
| CAI8056429.1 | QUEUINE TRNA-RIBOSYLTRANSFERASE |
| CAI8056428.1 | QUEUINE TRNA-RIBOSYLTRANSFERASE |
| CAI8056427.1 | QUEUINE TRNA-RIBOSYLTRANSFERASE |
| CAI8056426.1 | QUEUINE TRNA-RIBOSYLTRANSFERASE |
| CAI8056430.1 | CYCLOINULO-OLIGOSACCHARIDE FRUCTANOTRANSFERASE-RELATED |
| CAI8056431.1 | |
| CAI8056432.1 | IDURONATE 2-SULFATASE |
| CAI8056433.1 | TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE |
| CAI8056434.1 | TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE |
| CAI8056435.1 | |
| CAI8056436.1 | |
| CAI8056437.1 | |
| CAI8056438.1 | |
| CAI8056439.1 | |
| CAI8056440.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8056441.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8056442.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8056443.1 | |
| CAI8056444.1 | |
| CAI8056445.1 | |
| CAI8056446.1 | |
| CAI8056447.1 | TUBULIN POLYGLUTAMYLASE |
| CAI8056448.1 | TUBULIN POLYGLUTAMYLASE |
| CAI8056450.1 | |
| CAI8056449.1 | |
| CAI8056451.1 | |
| CAI8056452.1 | SYNAPTOTAGMIN |
| CAI8056453.1 | |
| CAI8056454.1 | SYNAPTOTAGMIN |
| CAI8056455.1 | SYNAPTOTAGMIN |
| CAI8056456.1 | SYNAPTOTAGMIN |
| CAI8056457.1 | SYNAPTOTAGMIN |
| CAI8056458.1 | |
| CAI8056460.1 | SYNAPTOTAGMIN |
| CAI8056459.1 | SYNAPTOTAGMIN |
| CAI8056461.1 | SYNAPTOTAGMIN |
| CAI8056462.1 | TUNGSTEN-CONTAINING FORMYLMETHANOFURAN DEHYDROGENASE 2 SUBUNIT B |
| CAI8056463.1 | TUNGSTEN-CONTAINING FORMYLMETHANOFURAN DEHYDROGENASE 2 SUBUNIT B |
| CAI8056464.1 | FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, IRON-SULFUR SUBUNIT |
| CAI8056465.1 | |
| CAI8056466.1 | |
| CAI8056467.1 | |
| CAI8056468.1 | |
| CAI8056469.1 | |
| CAI8056470.1 |
