Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8056471.1 | |
| CAI8056472.1 | |
| CAI8056473.1 | |
| CAI8056474.1 | |
| CAI8056476.1 | ATP-DEPENDENT DNA HELICASE |
| CAI8056475.1 | ATP-DEPENDENT DNA HELICASE |
| CAI8056477.1 | |
| CAI8056478.1 | |
| CAI8056479.1 | |
| CAI8056480.1 | |
| CAI8056481.1 | UNCHARACTERIZED |
| CAI8056483.1 | PLASTIDIC GLUCOSE TRANSPORTER 4 |
| CAI8056482.1 | PLASTIDIC GLUCOSE TRANSPORTER 4 |
| CAI8056484.1 | PLASTIDIC GLUCOSE TRANSPORTER 4 |
| CAI8056485.1 | PLASTIDIC GLUCOSE TRANSPORTER 4 |
| CAI8056486.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8056487.1 | THIOREDOXIN REDUCTASE 1-RELATED-RELATED |
| CAI8056488.1 | ADENYLOSUCCINATE SYNTHETASE |
| CAI8056489.1 | UNCHARACTERIZED |
| CAI8056490.1 | UNCHARACTERIZED |
| CAI8056491.1 | GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE |
| CAI8056492.1 | SMAD |
| CAI8056494.1 | ACYL-COA DESATURASE |
| CAI8056493.1 | ACYL-COA DESATURASE |
| CAI8056495.1 | SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE |
| CAI8056497.1 | PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 |
| CAI8056496.1 | TSEC1-RELATED |
| CAI8056501.1 | RNA LARIAT DEBRANCHING ENZYME |
| CAI8056502.1 | RNA LARIAT DEBRANCHING ENZYME |
| CAI8056500.1 | RNA LARIAT DEBRANCHING ENZYME |
| CAI8056499.1 | RNA LARIAT DEBRANCHING ENZYME |
| CAI8056498.1 | RNA LARIAT DEBRANCHING ENZYME |
| CAI8056503.1 | RNA LARIAT DEBRANCHING ENZYME |
| CAI8056504.1 | AN1-TYPE ZINC FINGER PROTEIN |
| CAI8056505.1 | AN1-TYPE ZINC FINGER PROTEIN |
| CAI8056506.1 | RING FINGER PROTEIN 32 |
| CAI8056507.1 | |
| CAI8056508.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8056510.1 | |
| CAI8056511.1 | |
| CAI8056509.1 | |
| CAI8056512.1 | |
| CAI8056513.1 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE |
| CAI8056514.1 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE |
| CAI8056515.1 | |
| CAI8056516.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8056518.1 | |
| CAI8056517.1 | |
| CAI8056519.1 | |
| CAI8056523.1 |
