Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8056521.1 | |
| CAI8056520.1 | |
| CAI8056522.1 | |
| CAI8056524.1 | |
| CAI8056525.1 | |
| CAI8056526.1 | |
| CAI8056530.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8056529.1 | ROLLING PEBBLES, ISOFORM B |
| CAI8056528.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8056527.1 | |
| CAI8056532.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8056531.1 | MOLTING PROTEIN MLT-4 |
| CAI8056533.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8056534.1 | |
| CAI8056535.1 | |
| CAI8056536.1 | |
| CAI8056544.1 | UNCHARACTERIZED |
| CAI8056545.1 | UNCHARACTERIZED |
| CAI8056546.1 | UNCHARACTERIZED |
| CAI8056547.1 | UNCHARACTERIZED |
| CAI8056548.1 | UNCHARACTERIZED |
| CAI8056549.1 | UNCHARACTERIZED |
| CAI8056537.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8056540.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 162 |
| CAI8056539.1 | |
| CAI8056541.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 162 |
| CAI8056542.1 | |
| CAI8056538.1 | |
| CAI8056543.1 | |
| CAI8056552.1 | |
| CAI8056550.1 | |
| CAI8056551.1 | |
| CAI8056553.1 | |
| CAI8056554.1 | |
| CAI8056555.1 | PROTEIN SIDEKICK |
| CAI8056556.1 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF |
| CAI8056557.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8056558.1 | |
| CAI8056559.1 | UPF0145 PROTEIN YBJQ |
| CAI8056560.1 | |
| CAI8056561.1 | TRANSLATION INITIATION FACTOR IF-3 |
| CAI8056562.1 | |
| CAI8056563.1 | MOLYBDOPTERIN BIOSYNTHESIS PROTEIN |
| CAI8056565.1 | PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 |
| CAI8056564.1 | PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 |
| CAI8056566.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8056567.1 | |
| CAI8056568.1 | 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE-RELATED |
| CAI8056569.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8056570.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
