Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8056671.1 | 26S PROTEASOME REGULATORY SUBUNIT |
| CAI8056672.1 | 26S PROTEASOME REGULATORY SUBUNIT |
| CAI8056673.1 | |
| CAI8056674.1 | |
| CAI8056676.1 | |
| CAI8056675.1 | |
| CAI8056677.1 | SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT ALPHA |
| CAI8056678.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8056679.1 | FASTING-INDUCIBLE INTEGRAL MEMBRANE PROTEIN TM6P1-RELATED |
| CAI8056680.1 | PROTEIN ARGININE N-METHYLTRANSFERASE |
| CAI8056682.1 | GABA-B RECEPTOR |
| CAI8056681.1 | GABA-B RECEPTOR |
| CAI8056686.1 | MASK PROTEIN |
| CAI8056685.1 | MASK PROTEIN |
| CAI8056687.1 | ANKYRIN REPEAT PROTEIN |
| CAI8056684.1 | MASK PROTEIN |
| CAI8056683.1 | MASK PROTEIN |
| CAI8056688.1 | ANKYRIN REPEAT CONTAINING |
| CAI8056689.1 | |
| CAI8056690.1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
| CAI8056691.1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
| CAI8056692.1 | - |
| CAI8056693.1 | |
| CAI8056694.1 | |
| CAI8056695.1 | |
| CAI8056697.1 | MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE |
| CAI8056696.1 | MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE |
| CAI8056698.1 | |
| CAI8056699.1 | EUKARYOTIC TRANSLATION ELONGATION FACTOR 1 EPSILON-1 |
| CAI8056700.1 | UNCHARACTERIZED |
| CAI8056702.1 | |
| CAI8056701.1 | |
| CAI8056703.1 | |
| CAI8056704.1 | ATP-DEPENDENT DNA HELICASE |
| CAI8056705.1 | |
| CAI8056706.1 | |
| CAI8056707.1 | |
| CAI8056708.1 | |
| CAI8056709.1 | MCG48959-RELATED |
| CAI8056711.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8056710.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8056714.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 151 |
| CAI8056713.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 151 |
| CAI8056712.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 151 |
| CAI8056715.1 | SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE |
| CAI8056717.1 | SIMILAR TO CHROMOSOME 3 OPEN READING FRAME 20 |
| CAI8056716.1 | SIMILAR TO CHROMOSOME 3 OPEN READING FRAME 20 |
| CAI8056719.1 | SIMILAR TO CHROMOSOME 3 OPEN READING FRAME 20 |
| CAI8056720.1 | SIMILAR TO CHROMOSOME 3 OPEN READING FRAME 20 |
| CAI8056718.1 |
