Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8056724.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9-RELATED |
| CAI8056722.1 | SIGNAL PEPTIDE PEPTIDASE |
| CAI8056723.1 | SIGNAL PEPTIDE PEPTIDASE |
| CAI8056721.1 | DEP DOMAIN PROTEIN |
| CAI8056726.1 | |
| CAI8056725.1 | |
| CAI8056728.1 | |
| CAI8056729.1 | |
| CAI8056727.1 | |
| CAI8056730.1 | |
| CAI8056733.1 | |
| CAI8056732.1 | |
| CAI8056731.1 | |
| CAI8056734.1 | |
| CAI8056735.1 | |
| CAI8056736.1 | ETS |
| CAI8056737.1 | ETS |
| CAI8056738.1 | |
| CAI8056739.1 | |
| CAI8056740.1 | PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED |
| CAI8056741.1 | FATTY ACID ACYL TRANSFERASE-RELATED |
| CAI8056742.1 | FATTY ACID ACYL TRANSFERASE-RELATED |
| CAI8056744.1 | CYTOCHROME P450 FAMILY 3 |
| CAI8056743.1 | CYTOCHROME P450 FAMILY 3 |
| CAI8056745.1 | CYTOCHROME P450 FAMILY 3 |
| CAI8056746.1 | CYTOCHROME P450 FAMILY 3 |
| CAI8056747.1 | |
| CAI8056748.1 | |
| CAI8056749.1 | |
| CAI8056750.1 | MOLTING PROTEIN MLT-4 |
| CAI8056752.1 | CYTOKINE RECEPTOR |
| CAI8056751.1 | |
| CAI8056753.1 | |
| CAI8056754.1 | REVERSE TRANSCRIPTASES |
| CAI8056759.1 | RNA PROCESSING PROTEIN LD23810P |
| CAI8056758.1 | RNA PROCESSING PROTEIN LD23810P |
| CAI8056756.1 | RNA PROCESSING PROTEIN LD23810P |
| CAI8056755.1 | RNA PROCESSING PROTEIN LD23810P |
| CAI8056757.1 | RNA PROCESSING PROTEIN LD23810P |
| CAI8056760.1 | RNA PROCESSING PROTEIN LD23810P |
| CAI8056761.1 | RNA PROCESSING PROTEIN LD23810P |
| CAI8056762.1 | RNA PROCESSING PROTEIN LD23810P |
| CAI8056763.1 | |
| CAI8056764.1 | |
| CAI8056765.1 | WSCD FAMILY MEMBER CG9164 |
| CAI8056769.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 40 |
| CAI8056768.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 40 |
| CAI8056770.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 40 |
| CAI8056767.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 40 |
| CAI8056766.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 40 |
