Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8056820.1 | PHOSPHOGLYCERATE KINASE |
| CAI8056822.1 | COFACTOR-INDEPENDENT PHOSPHOGLYCERATE MUTASE |
| CAI8056823.1 | TRIOSEPHOSPHATE ISOMERASE |
| CAI8056824.1 | TRIOSEPHOSPHATE ISOMERASE |
| CAI8056825.1 | TRNA DIMETHYLALLYLTRANSFERASE |
| CAI8056826.1 | TRNA DIMETHYLALLYLTRANSFERASE |
| CAI8056827.1 | DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC |
| CAI8056829.1 | DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC |
| CAI8056828.1 | DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC |
| CAI8056830.1 | |
| CAI8056831.1 | AMINO ACID AMINOTRANSFERASE |
| CAI8056832.1 | GTP-BINDING PROTEIN HFLX |
| CAI8056833.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8056834.1 | ENOYL-COA HYDRATASE |
| CAI8056835.1 | QUORUM-QUENCHING LACTONASE YTNP-RELATED-RELATED |
| CAI8056836.1 | ALPHA-D-RIBOSE 1-METHYLPHOSPHONATE 5-TRIPHOSPHATE DIPHOSPHATASE |
| CAI8056837.1 | |
| CAI8056838.1 | SEPTUM SITE-DETERMINING PROTEIN MIND HOMOLOG, CHLOROPLASTIC-RELATED |
| CAI8056839.1 | SEPTUM SITE-DETERMINING PROTEIN MINC |
| CAI8056840.1 | ACETYL-COA C-ACETYLTRANSFERASE |
| CAI8056841.1 | TRANSLATION ELONGATION FACTOR-RELATED |
| CAI8056842.1 | |
| CAI8056843.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8056844.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8056845.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8056847.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8056846.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8056848.1 | 10 KDA HEAT SHOCK PROTEIN |
| CAI8056849.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8056850.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8056851.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8056852.1 | TMRNA-BINDING COMPONENT OF TRANS-TRANSLATION TAGGING COMPLEX |
| CAI8056853.1 | DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC |
| CAI8056854.1 | COFACTOR-INDEPENDENT PHOSPHOGLYCERATE MUTASE |
| CAI8056858.1 | PHOSPHOGLYCERATE KINASE |
| CAI8056857.1 | PHOSPHOGLYCERATE KINASE |
| CAI8056855.1 | PHOSPHOGLYCERATE KINASE |
| CAI8056856.1 | PHOSPHOGLYCERATE KINASE |
| CAI8056859.1 | GERANYLGERANYL PYROPHOSPHATE SYNTHASE |
| CAI8056860.1 | PEPTIDASE S9 PROLYL OLIGOPEPTIDASE |
| CAI8056861.1 | AMINO-ACID AMINOTRANSFERASE |
| CAI8056862.1 | AMINO-ACID AMINOTRANSFERASE |
| CAI8056863.1 | INNER MEMBRANE PROTEIN YGIH |
| CAI8056865.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8056864.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8056869.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8056868.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8056867.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8056866.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8056870.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
