Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8057372.1 | |
| CAI8057371.1 | |
| CAI8057373.1 | |
| CAI8057374.1 | |
| CAI8057375.1 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| CAI8057376.1 | |
| CAI8057377.1 | |
| CAI8057378.1 | |
| CAI8057379.1 | |
| CAI8057380.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8057381.1 | |
| CAI8057382.1 | ATP-DEPENDENT DNA HELICASE |
| CAI8057383.1 | |
| CAI8057384.1 | |
| CAI8057386.1 | |
| CAI8057385.1 | |
| CAI8057387.1 | |
| CAI8057388.1 | CYTOKINE RECEPTOR |
| CAI8057391.1 | GABA-B RECEPTOR |
| CAI8057390.1 | |
| CAI8057389.1 | |
| CAI8057392.1 | GABA-B RECEPTOR |
| CAI8057393.1 | GABA-B RECEPTOR |
| CAI8057394.1 | |
| CAI8057395.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8057396.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8057397.1 | TRANSAMIDASE |
| CAI8057398.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8057399.1 | COENZYME Q10 BIOSYNTHESIS PROTEIN 7 |
| CAI8057401.1 | GLUCOSE-6-PHOSPHATE ISOMERASE |
| CAI8057402.1 | GLUCOSE-6-PHOSPHATE ISOMERASE |
| CAI8057400.1 | GLUCOSE-6-PHOSPHATE ISOMERASE |
| CAI8057403.1 | D-XYLONATE DEHYDRATASE |
| CAI8057404.1 | D-XYLONATE DEHYDRATASE |
| CAI8057405.1 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD |
| CAI8057406.1 | CYSTATHIONINE BETA-LYASE-RELATED |
| CAI8057407.1 | DIHYDROXY-ACID DEHYDRATASE DAD |
| CAI8057408.1 | |
| CAI8057409.1 | VALYL-TRNA SYNTHETASES |
| CAI8057410.1 | VALYL-TRNA SYNTHETASES |
| CAI8057411.1 | |
| CAI8057412.1 | ZINC UPTAKE REGULATION PROTEIN |
| CAI8057413.1 | |
| CAI8057414.1 | D-ALANYL-D-ALANINE DIPEPTIDASE |
| CAI8057416.1 | IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED |
| CAI8057415.1 | IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED |
| CAI8057417.1 | |
| CAI8057418.1 | TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL |
| CAI8057419.1 | LIPID II FLIPPASE MURJ |
| CAI8057420.1 | BIFUNCTIONAL URIDYLYLTRANSFERASE/URIDYLYL-REMOVING ENZYME |
