Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8057421.1 | REGULATOR OF SIGMA-E PROTEASE RSEP |
| CAI8057423.1 | UDP-3-O-ACYLGLUCOSAMINE N-ACYLTRANSFERASE |
| CAI8057422.1 | UDP-3-O-ACYLGLUCOSAMINE N-ACYLTRANSFERASE |
| CAI8057424.1 | 3-HYDROXYACYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE |
| CAI8057425.1 | ACYL-[ACYL-CARRIER-PROTEIN]--UDP-N-ACETYLGLUCOSAMINE O-ACYLTRANSFERASE |
| CAI8057426.1 | LIPID-A-DISACCHARIDE SYNTHASE |
| CAI8057427.1 | LIPID-A-DISACCHARIDE SYNTHASE |
| CAI8057428.1 | LIPID-A-DISACCHARIDE SYNTHASE |
| CAI8057430.1 | |
| CAI8057429.1 | |
| CAI8057431.1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
| CAI8057432.1 | TRANSAMIDASE |
| CAI8057433.1 | ARCHAEAL-TYPE GLUTAMATE SYNTHASE [NADPH] |
| CAI8057434.1 | TUNGSTEN FORMYLMETHANOFURAN DEHYDROGENASE, SUBUNIT C (FWDC) |
| CAI8057435.1 | AMIDOPHOSPHORIBOSYLTRANSFERASE |
| CAI8057436.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8057437.1 | |
| CAI8057438.1 | SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN |
| CAI8057439.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8057440.1 | |
| CAI8057441.1 | ABC TRANSPORTER ATP-BINDING PROTEIN |
| CAI8057442.1 | NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASE |
| CAI8057443.1 | ADENOSYLCOBINAMIDE-GDP RIBAZOLETRANSFERASE |
| CAI8057444.1 | FLUORIDE EXPORT PROTEIN 1-RELATED |
| CAI8057445.1 | MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE |
| CAI8057446.1 | DNA-DIRECTED RNA POLYMERASE SUBUNIT OMEGA |
| CAI8057447.1 | GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE |
| CAI8057448.1 | CITRATE SYNTHASE |
| CAI8057449.1 | - |
| CAI8057450.1 | CYTOCHROME C |
| CAI8057451.1 | INOSITOL-3-PHOSPHATE SYNTHASE |
| CAI8057452.1 | TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1111A |
| CAI8057453.1 | |
| CAI8057455.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8057454.1 | PROTEIN ENHANCER OF SEVENLESS 2B |
| CAI8057457.1 | ETHANOLAMINEPHOSPHOTRANSFERASE |
| CAI8057458.1 | ETHANOLAMINEPHOSPHOTRANSFERASE |
| CAI8057460.1 | ETHANOLAMINEPHOSPHOTRANSFERASE |
| CAI8057459.1 | ETHANOLAMINEPHOSPHOTRANSFERASE |
| CAI8057456.1 | |
| CAI8057461.1 | ETHANOLAMINEPHOSPHOTRANSFERASE |
| CAI8057462.1 | ETHANOLAMINEPHOSPHOTRANSFERASE |
| CAI8057463.1 | |
| CAI8057464.1 | |
| CAI8057465.1 | TRANSMEMBRANE PROTEIN 14, 15 |
| CAI8057467.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8057466.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8057468.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8057469.1 | JITTERBUG, ISOFORM N |
| CAI8057470.1 |
