Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8057121.1 | ACYL-COA DEHYDROGENASE |
| CAI8057122.1 | |
| CAI8057128.1 | RNA HELICASE |
| CAI8057127.1 | RNA HELICASE |
| CAI8057126.1 | RNA HELICASE |
| CAI8057125.1 | RNA HELICASE |
| CAI8057124.1 | |
| CAI8057123.1 | |
| CAI8057129.1 | RNA HELICASE |
| CAI8057130.1 | RNA HELICASE |
| CAI8057131.1 | |
| CAI8057132.1 | WD REPEAT-CONTAINING PROTEIN 55 |
| CAI8057133.1 | RAS-RELATED PROTEIN RAB |
| CAI8057135.1 | RAS-RELATED PROTEIN RAB |
| CAI8057134.1 | RAS-RELATED PROTEIN RAB |
| CAI8057136.1 | |
| CAI8057138.1 | WASP-1 |
| CAI8057137.1 | WASP-1 |
| CAI8057139.1 | WASP-1 |
| CAI8057140.1 | |
| CAI8057141.1 | |
| CAI8057142.1 | |
| CAI8057147.1 | U4/U6-ASSOCIATED RNA SPLICING FACTOR-RELATED |
| CAI8057146.1 | U4/U6-ASSOCIATED RNA SPLICING FACTOR-RELATED |
| CAI8057145.1 | U4/U6-ASSOCIATED RNA SPLICING FACTOR-RELATED |
| CAI8057144.1 | U4/U6-ASSOCIATED RNA SPLICING FACTOR-RELATED |
| CAI8057143.1 | U4/U6-ASSOCIATED RNA SPLICING FACTOR-RELATED |
| CAI8057149.1 | HIGH MOBILITY GROUP PROTEIN 2 |
| CAI8057148.1 | HIGH MOBILITY GROUP PROTEIN 2 |
| CAI8057150.1 | HIGH MOBILITY GROUP PROTEIN 2 |
| CAI8057151.1 | ENOLASE |
| CAI8057152.1 | |
| CAI8057157.1 | SAPOSIN-RELATED |
| CAI8057156.1 | SAPOSIN-RELATED |
| CAI8057154.1 | SAPOSIN-RELATED |
| CAI8057155.1 | SAPOSIN-RELATED |
| CAI8057153.1 | SAPOSIN-RELATED |
| CAI8057158.1 | SAPOSIN-RELATED |
| CAI8057159.1 | SAPOSIN-RELATED |
| CAI8057160.1 | SAPOSIN-RELATED |
| CAI8057161.1 | SAPOSIN-RELATED |
| CAI8057162.1 | |
| CAI8057163.1 | |
| CAI8057164.1 | |
| CAI8057165.1 | |
| CAI8057166.1 | |
| CAI8057167.1 | |
| CAI8057168.1 | |
| CAI8057169.1 | PROTEASE M1 ZINC METALLOPROTEASE |
| CAI8057170.1 |
