Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8057171.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8057172.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8057173.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8057174.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8057175.1 | |
| CAI8057176.1 | |
| CAI8057177.1 | |
| CAI8057178.1 | COMPONENT OF ATP-DEPENDENT DSDNA EXONUCLEASE |
| CAI8057179.1 | |
| CAI8057180.1 | |
| CAI8057181.1 | |
| CAI8057182.1 | |
| CAI8057183.1 | |
| CAI8057184.1 | SHORT-CHAIN DEHYDROGENASE REDUCTASE |
| CAI8057185.1 | |
| CAI8057186.1 | SLR0285 PROTEIN |
| CAI8057187.1 | BLR3401 PROTEIN |
| CAI8057188.1 | CHOLINE MONOOXYGENASE, CHLOROPLASTIC |
| CAI8057189.1 | PEPTIDASE S9 PROLYL OLIGOPEPTIDASE |
| CAI8057190.1 | DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL |
| CAI8057191.1 | 50S RIBOSOMAL PROTEIN L28 |
| CAI8057192.1 | 50S RIBOSOMAL PROTEIN L28 |
| CAI8057194.1 | ARGININOSUCCINATE LYASE |
| CAI8057193.1 | ARGININOSUCCINATE LYASE |
| CAI8057195.1 | |
| CAI8057196.1 | PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE-RELATED |
| CAI8057197.1 | - |
| CAI8057198.1 | |
| CAI8057199.1 | PEROXYUREIDOACRYLATE/UREIDOACRYLATE AMIDOHYDROLASE-RELATED |
| CAI8057200.1 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED |
| CAI8057201.1 | ALDEHYDE DEHYDROGENASE |
| CAI8057202.1 | |
| CAI8057203.1 | MAGNESIUM TRANSPORTER MGTE |
| CAI8057204.1 | UVRC/OXIDOREDUCTASE |
| CAI8057205.1 | SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA |
| CAI8057206.1 | SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA |
| CAI8057207.1 | |
| CAI8057208.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090) |
| CAI8057209.1 | QUINONE OXIDOREDUCTASE PIG3-RELATED |
| CAI8057210.1 | - |
| CAI8057211.1 | |
| CAI8057214.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8057213.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8057212.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8057215.1 | |
| CAI8057216.1 | OXIDOREDUCTASE, ALDO/KETO REDUCTASE FAMILY PROTEIN |
| CAI8057217.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8057218.1 | QUORUM-QUENCHING LACTONASE YTNP-RELATED-RELATED |
| CAI8057219.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8057220.1 | KETOACID-COENZYME A TRANSFERASE |
