Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8057320.1 | |
| CAI8057321.1 | |
| CAI8057323.1 | ZINC FINGER RNA-BINDING PROTEIN |
| CAI8057324.1 | N-LINKED OLIGOSACCHARIDE PROCESSING |
| CAI8057329.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
| CAI8057330.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
| CAI8057331.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
| CAI8057332.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
| CAI8057328.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
| CAI8057327.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
| CAI8057326.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
| CAI8057325.1 | SIMILAR TO CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 (CHD-1) |
| CAI8057333.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
| CAI8057334.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
| CAI8057335.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
| CAI8057336.1 | |
| CAI8057337.1 | RGM DOMAIN FAMILY MEMBER DRAG-1 |
| CAI8057338.1 | |
| CAI8057339.1 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE DSOR1-LIKE PROTEIN |
| CAI8057341.1 | |
| CAI8057342.1 | |
| CAI8057340.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8057354.1 | HISTONE DEACETYLASE 2-RELATED |
| CAI8057353.1 | HISTONE DEACETYLASE 2-RELATED |
| CAI8057352.1 | |
| CAI8057347.1 | |
| CAI8057349.1 | |
| CAI8057350.1 | |
| CAI8057351.1 | |
| CAI8057348.1 | |
| CAI8057345.1 | HISTONE DEACETYLASE 2-RELATED |
| CAI8057346.1 | HISTONE DEACETYLASE 2-RELATED |
| CAI8057344.1 | HISTONE DEACETYLASE 2-RELATED |
| CAI8057343.1 | |
| CAI8057355.1 | |
| CAI8057356.1 | |
| CAI8057357.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8057358.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8057359.1 | |
| CAI8057360.1 | |
| CAI8057361.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8057363.1 | FIBRILLIN-RELATED |
| CAI8057362.1 | FIBRILLIN-RELATED |
| CAI8057365.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 |
| CAI8057366.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 |
| CAI8057367.1 | |
| CAI8057368.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 |
| CAI8057369.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 |
| CAI8057364.1 | |
| CAI8057370.1 |
