Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8057473.1 | |
| CAI8057472.1 | |
| CAI8057471.1 | |
| CAI8057474.1 | |
| CAI8057476.1 | E3 UBIQUITIN-PROTEIN LIGASE MYCBP2 |
| CAI8057475.1 | E3 UBIQUITIN-PROTEIN LIGASE MYCBP2 |
| CAI8057479.1 | |
| CAI8057478.1 | |
| CAI8057477.1 | |
| CAI8057480.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8057481.1 | CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED |
| CAI8057482.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8057483.1 | |
| CAI8057484.1 | MALATE DEHYDROGENASE |
| CAI8057485.1 | MALATE DEHYDROGENASE |
| CAI8057486.1 | MALATE DEHYDROGENASE |
| CAI8057487.1 | |
| CAI8057488.1 | |
| CAI8057492.1 | CLASP |
| CAI8057491.1 | CLASP |
| CAI8057490.1 | CLASP |
| CAI8057489.1 | CLASP |
| CAI8057493.1 | CLASP |
| CAI8057497.1 | SORTING NEXIN |
| CAI8057495.1 | SORTING NEXIN |
| CAI8057494.1 | SORTING NEXIN |
| CAI8057496.1 | PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY F MEMBER 2-RELATED |
| CAI8057498.1 | |
| CAI8057499.1 | |
| CAI8057500.1 | |
| CAI8057502.1 | CORNICHON-RELATED |
| CAI8057501.1 | CORNICHON-RELATED |
| CAI8057503.1 | IMMUNOGLOBULIN-BINDING PROTEIN 1 |
| CAI8057504.1 | 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED |
| CAI8057505.1 | GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2 |
| CAI8057511.1 | ALANYL-TRNA EDITING PROTEIN |
| CAI8057509.1 | ALANYL-TRNA EDITING PROTEIN |
| CAI8057508.1 | ALANYL-TRNA EDITING PROTEIN |
| CAI8057507.1 | ALANYL-TRNA EDITING PROTEIN |
| CAI8057506.1 | ALANYL-TRNA EDITING PROTEIN |
| CAI8057512.1 | |
| CAI8057510.1 | ALANYL-TRNA EDITING PROTEIN |
| CAI8057513.1 | |
| CAI8057514.1 | |
| CAI8057515.1 | |
| CAI8057516.1 | |
| CAI8057517.1 | DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED |
| CAI8057518.1 | |
| CAI8057520.1 | METAXIN RELATED |
| CAI8057519.1 | METAXIN RELATED |
