Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8057571.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8057572.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8057573.1 | |
| CAI8057574.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8057575.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8057576.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8057577.1 | HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR HRCA |
| CAI8057578.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8057580.1 | |
| CAI8057579.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8057581.1 | |
| CAI8057583.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8057584.1 | |
| CAI8057582.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8057585.1 | |
| CAI8057586.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8057587.1 | |
| CAI8057588.1 | |
| CAI8057589.1 | POLY [ADP-RIBOSE] POLYMERASE |
| CAI8057590.1 | RNA BINDING PROTEIN |
| CAI8057591.1 | ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 2 |
| CAI8057597.1 | B9 DOMAIN-CONTAINING |
| CAI8057596.1 | B9 DOMAIN-CONTAINING |
| CAI8057595.1 | B9 DOMAIN-CONTAINING |
| CAI8057594.1 | B9 DOMAIN-CONTAINING |
| CAI8057593.1 | B9 DOMAIN-CONTAINING |
| CAI8057592.1 | |
| CAI8057598.1 | B9 DOMAIN-CONTAINING |
| CAI8057599.1 | B9 DOMAIN-CONTAINING |
| CAI8057601.1 | B9 DOMAIN-CONTAINING |
| CAI8057600.1 | B9 DOMAIN-CONTAINING |
| CAI8057602.1 | B9 DOMAIN-CONTAINING |
| CAI8057606.1 | ANTIGEN MLAA-22-RELATED |
| CAI8057605.1 | ANTIGEN MLAA-22-RELATED |
| CAI8057604.1 | ANTIGEN MLAA-22-RELATED |
| CAI8057603.1 | ANTIGEN MLAA-22-RELATED |
| CAI8057607.1 | RAS-RELATED PROTEIN RAB |
| CAI8057610.1 | FIBRILLIN-RELATED |
| CAI8057609.1 | FIBRILLIN-RELATED |
| CAI8057608.1 | FIBRILLIN-RELATED |
| CAI8057611.1 | FIBRILLIN-RELATED |
| CAI8057613.1 | |
| CAI8057612.1 | |
| CAI8057614.1 | |
| CAI8057615.1 | |
| CAI8057616.1 | PROTEIN PITCHFORK |
| CAI8057617.1 | |
| CAI8057618.1 | |
| CAI8057619.1 | BONUS, ISOFORM C-RELATED |
| CAI8057621.1 | EPOXIDE HYDROLASE |
