Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8057622.1 | |
| CAI8057620.1 | EPOXIDE HYDROLASE |
| CAI8057624.1 | CYTOKINE RECEPTOR |
| CAI8057625.1 | CYTOKINE RECEPTOR |
| CAI8057623.1 | CYTOKINE RECEPTOR |
| CAI8057626.1 | |
| CAI8057630.1 | |
| CAI8057631.1 | |
| CAI8057632.1 | |
| CAI8057633.1 | |
| CAI8057634.1 | |
| CAI8057629.1 | |
| CAI8057627.1 | |
| CAI8057628.1 | |
| CAI8057635.1 | |
| CAI8057636.1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 2 |
| CAI8057637.1 | |
| CAI8057638.1 | KREV INTERACTION TRAPPED 1-RELATED |
| CAI8057639.1 | |
| CAI8057640.1 | |
| CAI8057641.1 | |
| CAI8057642.1 | |
| CAI8057643.1 | UDP/ADP-SUGAR PYROPHOSPHATASE |
| CAI8057644.1 | UDP/ADP-SUGAR PYROPHOSPHATASE |
| CAI8057645.1 | VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED |
| CAI8057646.1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
| CAI8057650.1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| CAI8057651.1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| CAI8057647.1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| CAI8057648.1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| CAI8057649.1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| CAI8057652.1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| CAI8057653.1 | GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1 |
| CAI8057654.1 | GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1 |
| CAI8057655.1 | GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1 |
| CAI8057657.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI8057656.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI8057659.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR-RELATED |
| CAI8057658.1 | |
| CAI8057660.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI8057661.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI8057663.1 | |
| CAI8057662.1 | |
| CAI8057664.1 | |
| CAI8057666.1 | N-ALPHA-ACETYLTRANSFERASE 30 |
| CAI8057665.1 | N-ALPHA-ACETYLTRANSFERASE 30 |
| CAI8057667.1 | |
| CAI8057668.1 | |
| CAI8057669.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8057670.1 |
