Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8057821.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8057822.1 | |
| CAI8057823.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 |
| CAI8057824.1 | NIPSNAP-RELATED |
| CAI8057825.1 | UBIQUITIN-LIKE-CONJUGATING ENZYME ATG10 |
| CAI8057828.1 | POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED |
| CAI8057827.1 | POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED |
| CAI8057826.1 | POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED |
| CAI8057830.1 | POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED |
| CAI8057829.1 | POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED |
| CAI8057831.1 | |
| CAI8057832.1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| CAI8057834.1 | ATP SYNTHASE DELTA/EPSILON CHAIN |
| CAI8057833.1 | ATP SYNTHASE DELTA/EPSILON CHAIN |
| CAI8057835.1 | |
| CAI8057836.1 | CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT |
| CAI8057837.1 | CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT |
| CAI8057840.1 | GLYCOSYL TRANSFERASE |
| CAI8057839.1 | GLYCOSYL TRANSFERASE |
| CAI8057838.1 | GLYCOSYL TRANSFERASE |
| CAI8057841.1 | GLYCOSYL TRANSFERASE |
| CAI8057846.1 | RHO-GTPASE-ACTIVATING PROTEIN 6 FAMILY MEMBER |
| CAI8057845.1 | RHO-GTPASE-ACTIVATING PROTEIN 6 FAMILY MEMBER |
| CAI8057844.1 | RHO-GTPASE-ACTIVATING PROTEIN 6 FAMILY MEMBER |
| CAI8057843.1 | RHO-GTPASE-ACTIVATING PROTEIN 6 FAMILY MEMBER |
| CAI8057842.1 | |
| CAI8057848.1 | RHO-GTPASE-ACTIVATING PROTEIN 6 FAMILY MEMBER |
| CAI8057847.1 | RHO-GTPASE-ACTIVATING PROTEIN 6 FAMILY MEMBER |
| CAI8057849.1 | RHO-GTPASE-ACTIVATING PROTEIN 6 FAMILY MEMBER |
| CAI8057850.1 | |
| CAI8057851.1 | |
| CAI8057853.1 | BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED |
| CAI8057852.1 | BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED |
| CAI8057854.1 | BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED |
| CAI8057855.1 | BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED |
| CAI8057856.1 | |
| CAI8057857.1 | |
| CAI8057858.1 | |
| CAI8057859.1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| CAI8057860.1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| CAI8057861.1 | |
| CAI8057862.1 | YES-ASSOCIATED PROTEIN YAP1 FAMILY MEMBER |
| CAI8057863.1 | YES-ASSOCIATED PROTEIN YAP1 FAMILY MEMBER |
| CAI8057864.1 | CENTROSOMAL PROTEIN OF 44 KDA |
| CAI8057865.1 | PALMITOYLTRANSFERASE ZDHHC16 |
| CAI8057869.1 | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 |
| CAI8057867.1 | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 |
| CAI8057868.1 | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 |
| CAI8057866.1 | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 |
| CAI8057871.1 |
