Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8057870.1 | |
| CAI8057872.1 | |
| CAI8057874.1 | ABC TRANSPORTER B FAMILY |
| CAI8057875.1 | ABC TRANSPORTER B FAMILY |
| CAI8057873.1 | ABC TRANSPORTER B FAMILY |
| CAI8057876.1 | ABC TRANSPORTER B FAMILY |
| CAI8057877.1 | CENTROSOMAL PROTEIN CEP135 |
| CAI8057879.1 | CENTROSOMAL PROTEIN CEP135 |
| CAI8057878.1 | CENTROSOMAL PROTEIN CEP135 |
| CAI8057880.1 | CENTROSOMAL PROTEIN CEP135 |
| CAI8057881.1 | B-LYMPHOCYTE ANTIGEN-RELATED |
| CAI8057882.1 | B-LYMPHOCYTE ANTIGEN-RELATED |
| CAI8057883.1 | B-LYMPHOCYTE ANTIGEN-RELATED |
| CAI8057886.1 | NUCLEOPORIN |
| CAI8057885.1 | |
| CAI8057884.1 | NUCLEOPORIN |
| CAI8057888.1 | NUCLEOPORIN |
| CAI8057887.1 | |
| CAI8057889.1 | NUCLEOPORIN |
| CAI8057890.1 | IFT140/172-RELATED |
| CAI8057892.1 | IFT140/172-RELATED |
| CAI8057891.1 | IFT140/172-RELATED |
| CAI8057893.1 | IFT140/172-RELATED |
| CAI8057894.1 | IFT140/172-RELATED |
| CAI8057895.1 | |
| CAI8057897.1 | SULFURTRANSFERASE-RELATED |
| CAI8057896.1 | |
| CAI8057898.1 | CYSTEINE DESULFURASE |
| CAI8057899.1 | CYSTEINE DESULFURASE |
| CAI8057900.1 | UNCHARACTERIZED |
| CAI8057904.1 | PROTEIN INTURNED |
| CAI8057901.1 | PROTEIN INTURNED |
| CAI8057902.1 | |
| CAI8057903.1 | PROTEIN INTURNED |
| CAI8057905.1 | PROTEIN INTURNED |
| CAI8057906.1 | |
| CAI8057907.1 | FAM11A, B PROTEIN |
| CAI8057908.1 | AMINO ACID TRANSPORTER |
| CAI8057910.1 | AMINO ACID TRANSPORTER |
| CAI8057909.1 | AMINO ACID TRANSPORTER |
| CAI8057911.1 | AMINO ACID TRANSPORTER |
| CAI8057912.1 | |
| CAI8057913.1 | DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL |
| CAI8057914.1 | DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL |
| CAI8057915.1 | |
| CAI8057916.1 | |
| CAI8057917.1 | |
| CAI8057918.1 | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 |
| CAI8057919.1 | TITIN |
| CAI8057920.1 | RECEPTOR KINASE-LIKE PROTEIN XA21 |
