Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8057921.1 | LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 |
| CAI8057922.1 | |
| CAI8057923.1 | |
| CAI8057924.1 | TWO-COMPONENT RESPONSE REGULATOR |
| CAI8057925.1 | 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE |
| CAI8057926.1 | 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE |
| CAI8057928.1 | NUCLEAR RECEPTOR CO-REPRESSOR RELATED NCOR |
| CAI8057927.1 | NUCLEAR RECEPTOR CO-REPRESSOR RELATED NCOR |
| CAI8057929.1 | |
| CAI8057930.1 | |
| CAI8057931.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8057932.1 | |
| CAI8057933.1 | ACYLOXYACYL HYDROLASE |
| CAI8057934.1 | |
| CAI8057935.1 | |
| CAI8057936.1 | PRE-MRNA-PROCESSING FACTOR 19 |
| CAI8057937.1 | PRE-MRNA-PROCESSING FACTOR 19 |
| CAI8057938.1 | BLOC-1 COMPLEX SUBUNIT 1 |
| CAI8057939.1 | BLOC-1 COMPLEX SUBUNIT 1 |
| CAI8057940.1 | DYNEIN ASSEMBLY FACTOR 4, AXONEMAL |
| CAI8057941.1 | SEL-1-LIKE PROTEIN |
| CAI8057943.1 | PHD FINGER PROTEIN 12 |
| CAI8057942.1 | JITTERBUG, ISOFORM N |
| CAI8057945.1 | PHD FINGER PROTEIN 12 |
| CAI8057944.1 | |
| CAI8057947.1 | RETINAL PROTEIN 4 |
| CAI8057946.1 | RETINAL PROTEIN 4 |
| CAI8057949.1 | |
| CAI8057948.1 | |
| CAI8057950.1 | |
| CAI8057951.1 | LIM/HOMEOBOX PROTEIN LHX |
| CAI8057952.1 | |
| CAI8057953.1 | GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 |
| CAI8057955.1 | GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 |
| CAI8057954.1 | GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 |
| CAI8057956.1 | GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 |
| CAI8057957.1 | |
| CAI8057958.1 | |
| CAI8057961.1 | UNCHARACTERIZED |
| CAI8057959.1 | UNCHARACTERIZED |
| CAI8057960.1 | UNCHARACTERIZED |
| CAI8057962.1 | UNCHARACTERIZED |
| CAI8057963.1 | UNCHARACTERIZED |
| CAI8057964.1 | UNCHARACTERIZED |
| CAI8057965.1 | |
| CAI8057966.1 | TIMEOUT/TIMELESS-2 |
| CAI8057968.1 | TESTIS-EXPRESSED PROTEIN 49 |
| CAI8057967.1 | |
| CAI8057970.1 | TESTIS-EXPRESSED PROTEIN 49 |
| CAI8057969.1 |
