Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8057973.1 | ATP-BINDING CASSETTE SUB-FAMILY C |
| CAI8057972.1 | ATP-BINDING CASSETTE SUB-FAMILY C |
| CAI8057971.1 | ATP-BINDING CASSETTE SUB-FAMILY C |
| CAI8057974.1 | |
| CAI8057975.1 | |
| CAI8057976.1 | UNCHARACTERIZED |
| CAI8057977.1 | |
| CAI8057980.1 | 2'-DEOXYNUCLEOSIDE 5'-PHOSPHATE N-HYDROLASE 1 |
| CAI8057979.1 | 2'-DEOXYNUCLEOSIDE 5'-PHOSPHATE N-HYDROLASE 1 |
| CAI8057978.1 | 2'-DEOXYNUCLEOSIDE 5'-PHOSPHATE N-HYDROLASE 1 |
| CAI8057981.1 | 2'-DEOXYNUCLEOSIDE 5'-PHOSPHATE N-HYDROLASE 1 |
| CAI8057982.1 | 2'-DEOXYNUCLEOSIDE 5'-PHOSPHATE N-HYDROLASE 1 |
| CAI8057984.1 | NUCLEAR PORE COMPLEX PROTEIN NUP133 |
| CAI8057983.1 | NUCLEAR PORE COMPLEX PROTEIN NUP133 |
| CAI8057985.1 | UNCHARACTERIZED |
| CAI8057987.1 | UBIQUITIN LIGASE E3 ALPHA-RELATED |
| CAI8057986.1 | LACTOYLGLUTATHIONE LYASE GLYOXALASE I |
| CAI8057988.1 | UBIQUITIN LIGASE E3 ALPHA-RELATED |
| CAI8057989.1 | UBIQUITIN LIGASE E3 ALPHA-RELATED |
| CAI8057990.1 | UBIQUITIN LIGASE E3 ALPHA-RELATED |
| CAI8057991.1 | UBIQUITIN LIGASE E3 ALPHA-RELATED |
| CAI8057992.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8057993.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8057994.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8057995.1 | |
| CAI8057997.1 | KELCH DOMAIN-CONTAINING PROTEIN |
| CAI8057999.1 | KELCH DOMAIN-CONTAINING PROTEIN |
| CAI8057998.1 | KELCH DOMAIN-CONTAINING PROTEIN |
| CAI8057996.1 | |
| CAI8058000.1 | |
| CAI8058002.1 | L-CYSTEINE DESULFHYDRASE |
| CAI8058004.1 | L-CYSTEINE DESULFHYDRASE |
| CAI8058001.1 | L-CYSTEINE DESULFHYDRASE |
| CAI8058003.1 | L-CYSTEINE DESULFHYDRASE |
| CAI8058005.1 | MUTT/NUDIX HYDROLASE |
| CAI8058006.1 | MUTT/NUDIX HYDROLASE |
| CAI8058009.1 | |
| CAI8058008.1 | |
| CAI8058007.1 | |
| CAI8058010.1 | |
| CAI8058011.1 | - |
| CAI8058012.1 | - |
| CAI8058015.1 | RING FINGER PROTEIN 25 |
| CAI8058014.1 | RING FINGER PROTEIN 25 |
| CAI8058013.1 | RING FINGER PROTEIN 25 |
| CAI8058017.1 | RING FINGER PROTEIN 25 |
| CAI8058016.1 | |
| CAI8058018.1 | RING FINGER PROTEIN 25 |
| CAI8058021.1 | TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN15 |
| CAI8058020.1 | TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN15 |
