Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8058171.1 | |
| CAI8058174.1 | |
| CAI8058173.1 | |
| CAI8058172.1 | |
| CAI8058176.1 | |
| CAI8058175.1 | |
| CAI8058177.1 | |
| CAI8058179.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8058178.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8058180.1 | ARGININOSUCCINATE SYNTHASE |
| CAI8058181.1 | AMINOTRANSFERASE CLASS III |
| CAI8058182.1 | N-ACETYLGLUTAMATE SYNTHASE |
| CAI8058183.1 | ARGININE BIOSYNTHESIS BIFUNCTIONAL PROTEIN ARGJ |
| CAI8058184.1 | ARGININE BIOSYNTHESIS BIFUNCTIONAL PROTEIN ARGJ |
| CAI8058185.1 | AMINOTRANSFERASE CLASS V |
| CAI8058186.1 | ALLANTOATE DEIMINASE-RELATED |
| CAI8058187.1 | |
| CAI8058188.1 | |
| CAI8058189.1 | UNCHARACTERIZED |
| CAI8058190.1 | IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL |
| CAI8058191.1 | NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [CARBOXYLATING] |
| CAI8058192.1 | BLL0828 PROTEIN |
| CAI8058193.1 | NUDIX HYDROLASE, NUDC SUBFAMILY |
| CAI8058194.1 | ENOYL-COA HYDRATASE |
| CAI8058195.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8058196.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8058197.1 | |
| CAI8058198.1 | PRESEQUENCE PROTEASE |
| CAI8058199.1 | PRESEQUENCE PROTEASE |
| CAI8058200.1 | TRANSAMIDASE |
| CAI8058201.1 | PHOSPHOTRIESTERASE-RELATED |
| CAI8058202.1 | FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED |
| CAI8058203.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8058204.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8058205.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8058206.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8058207.1 | MAJOR FACILITATOR SUPERFAMILY MULTIDRUG TRANSPORTER MFSC |
| CAI8058208.1 | UVRABC SYSTEM PROTEIN B |
| CAI8058209.1 | INNER MEMBRANE PROTEIN-RELATED-RELATED |
| CAI8058210.1 | BLL5662 PROTEIN-RELATED |
| CAI8058211.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8058212.1 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE |
| CAI8058213.1 | NIPSNAP-RELATED |
| CAI8058214.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8058215.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8058216.1 | |
| CAI8058217.1 | |
| CAI8058218.1 | ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE |
| CAI8058219.1 | |
| CAI8058220.1 |
