Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8058272.1 | |
| CAI8058271.1 | |
| CAI8058273.1 | |
| CAI8058274.1 | TRANSCRIPTION FACTOR CP2 |
| CAI8058275.1 | EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN |
| CAI8058276.1 | HYPOTHETICAL PROTEIN LOC691189 |
| CAI8058278.1 | DYNEIN INTERMEDIATE CHAIN |
| CAI8058279.1 | DYNEIN INTERMEDIATE CHAIN |
| CAI8058277.1 | SOLUTE CARRIER FAMILY 35 MEMBER B |
| CAI8058280.1 | |
| CAI8058281.1 | GLUTAMATE DECARBOXYLASE-RELATED |
| CAI8058284.1 | (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME |
| CAI8058283.1 | (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME |
| CAI8058282.1 | (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME |
| CAI8058286.1 | NON-HOMOLOGOUS END-JOINING FACTOR 1 |
| CAI8058285.1 | NON-HOMOLOGOUS END-JOINING FACTOR 1 |
| CAI8058289.1 | CENTAURIN-GAMMA-1A |
| CAI8058288.1 | CENTAURIN-GAMMA-1A |
| CAI8058287.1 | CENTAURIN-GAMMA-1A |
| CAI8058290.1 | CENTAURIN-GAMMA-1A |
| CAI8058291.1 | CENTAURIN-GAMMA-1A |
| CAI8058292.1 | EF HAND DOMAIN FAMILY A1,A2-RELATED |
| CAI8058293.1 | PEPTIDASE S9 PROLYL OLIGOPEPTIDASE |
| CAI8058294.1 | UROPORPHYRINOGEN-III SYNTHASE, CHLOROPLASTIC |
| CAI8058295.1 | ALCOHOL DEHYDROGENASE |
| CAI8058296.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8058297.1 | ACID HYDRATASE |
| CAI8058298.1 | TYPE-5 URACIL-DNA GLYCOSYLASE |
| CAI8058299.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8058300.1 | SAM-DEPENDENT METHYLTRANSFERASE |
| CAI8058301.1 | |
| CAI8058302.1 | JOUBERIN |
| CAI8058303.1 | VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 36 |
| CAI8058304.1 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 |
| CAI8058305.1 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 |
| CAI8058306.1 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 |
| CAI8058307.1 | |
| CAI8058308.1 | ANKYRIN REPEAT CONTAINING |
| CAI8058309.1 | ATP-DEPENDENT DNA HELICASE |
| CAI8058311.1 | |
| CAI8058310.1 | |
| CAI8058312.1 | |
| CAI8058313.1 | |
| CAI8058314.1 | |
| CAI8058315.1 | |
| CAI8058316.1 | |
| CAI8058317.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8058318.1 | |
| CAI8058321.1 | DIACYLGLYCEROL LIPASE HOMOLOG-RELATED |
| CAI8058320.1 | DIACYLGLYCEROL LIPASE HOMOLOG-RELATED |
