Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8058371.1 | THIOREDOXIN REDUCTASE 1-RELATED-RELATED |
| CAI8058372.1 | THIOREDOXIN REDUCTASE 1-RELATED-RELATED |
| CAI8058373.1 | TRANSAMIDASE |
| CAI8058374.1 | |
| CAI8058375.1 | |
| CAI8058376.1 | FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE SLYD |
| CAI8058377.1 | 5-KETO-D-GLUCONATE 5-REDUCTASE |
| CAI8058378.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURL |
| CAI8058379.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURL |
| CAI8058380.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURQ |
| CAI8058381.1 | ALTERED INHERITANCE OF MITOCHONDRIA PROTEIN 41, MITOCHONDRIAL |
| CAI8058382.1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| CAI8058384.1 | |
| CAI8058383.1 | 39S RIBOSOMAL PROTEIN L43 |
| CAI8058385.1 | |
| CAI8058386.1 | |
| CAI8058387.1 | METHYLCOBAMIDE:COM METHYLTRANSFERASE MTBA |
| CAI8058388.1 | |
| CAI8058389.1 | 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE |
| CAI8058390.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8058392.1 | |
| CAI8058393.1 | TUDOR DOMAIN CONTAINING PROTEIN |
| CAI8058394.1 | |
| CAI8058391.1 | TUDOR DOMAIN CONTAINING PROTEIN |
| CAI8058395.1 | |
| CAI8058396.1 | |
| CAI8058397.1 | COSTARS FAMILY PROTEIN ABRACL |
| CAI8058398.1 | DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A |
| CAI8058399.1 | - |
| CAI8058400.1 | SAM DOMAIN-CONTAINING PROTEIN-RELATED |
| CAI8058402.1 | ZINC FINGER PROTEIN 277 |
| CAI8058403.1 | ZINC FINGER PROTEIN 277 |
| CAI8058401.1 | ZINC FINGER PROTEIN 277 |
| CAI8058404.1 | DEPHOSPHO-COA KINASE-RELATED |
| CAI8058405.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8058406.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8058407.1 | CELL DIVISION PROTEIN KINASE |
| CAI8058408.1 | |
| CAI8058410.1 | 26S PROTEASOME REGULATORY SUBUNIT |
| CAI8058409.1 | 26S PROTEASOME REGULATORY SUBUNIT |
| CAI8058411.1 | 26S PROTEASOME REGULATORY SUBUNIT |
| CAI8058412.1 | 26S PROTEASOME REGULATORY SUBUNIT |
| CAI8058413.1 | N-MYRISTOYL TRANSFERASE |
| CAI8058415.1 | CALCIUM BINDING PROTEINS |
| CAI8058414.1 | CALCIUM BINDING PROTEINS |
| CAI8058416.1 | CALCIUM BINDING PROTEINS |
| CAI8058417.1 | |
| CAI8058418.1 | |
| CAI8058419.1 | |
| CAI8058420.1 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
