Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8058522.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8058517.1 | |
| CAI8058524.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8058523.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8058525.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8058526.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8058527.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8058529.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8058528.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8058530.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8058531.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8058532.1 | |
| CAI8058534.1 | |
| CAI8058533.1 | |
| CAI8058535.1 | UNCHARACTERIZED |
| CAI8058538.1 | |
| CAI8058537.1 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
| CAI8058536.1 | |
| CAI8058539.1 | UBIQUITIN THIOESTERASE |
| CAI8058540.1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
| CAI8058541.1 | 40S RIBOSOMAL PROTEIN S29 |
| CAI8058542.1 | UBX-RELATED |
| CAI8058543.1 | UBX-RELATED |
| CAI8058544.1 | OPSIN |
| CAI8058545.1 | |
| CAI8058546.1 | ECTOPIC P GRANULES PROTEIN 5 HOMOLOG |
| CAI8058548.1 | ECTOPIC P GRANULES PROTEIN 5 HOMOLOG |
| CAI8058547.1 | ECTOPIC P GRANULES PROTEIN 5 HOMOLOG |
| CAI8058550.1 | ECTOPIC P GRANULES PROTEIN 5 HOMOLOG |
| CAI8058549.1 | ECTOPIC P GRANULES PROTEIN 5 HOMOLOG |
| CAI8058553.1 | 60S RIBOSOMAL PROTEIN L23A |
| CAI8058552.1 | 60S RIBOSOMAL PROTEIN L23A |
| CAI8058554.1 | 60S RIBOSOMAL PROTEIN L23A |
| CAI8058551.1 | |
| CAI8058556.1 | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL |
| CAI8058555.1 | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL |
| CAI8058557.1 | ABC TRANSPORTER B FAMILY |
| CAI8058558.1 | LYSOZYME PROTEIN |
| CAI8058559.1 | LYSOZYME PROTEIN |
| CAI8058560.1 | PROTEIN-TYROSINE SULFOTRANSFERASE 2 |
| CAI8058562.1 | SER/THR-RICH PROTEIN T10 IN DGCR REGION |
| CAI8058561.1 | SER/THR-RICH PROTEIN T10 IN DGCR REGION |
| CAI8058563.1 | |
| CAI8058564.1 | RIM BINDING PROTEIN-RELATED |
| CAI8058565.1 | |
| CAI8058566.1 | PEPTIDASE S8 |
| CAI8058567.1 | PEPTIDASE S8 |
| CAI8058568.1 | PEPTIDASE S8 |
| CAI8058569.1 | |
| CAI8058570.1 | PROTEASE M14 CARBOXYPEPTIDASE |
