Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8058574.1 | |
| CAI8058573.1 | |
| CAI8058572.1 | |
| CAI8058571.1 | |
| CAI8058575.1 | |
| CAI8058576.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8058578.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8058577.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8058580.1 | |
| CAI8058579.1 | |
| CAI8058581.1 | |
| CAI8058582.1 | |
| CAI8058584.1 | S -2-HYDROXY-ACID OXIDASE-RELATED |
| CAI8058583.1 | S -2-HYDROXY-ACID OXIDASE-RELATED |
| CAI8058585.1 | PEPTIDASE M20 |
| CAI8058586.1 | |
| CAI8058587.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8058588.1 | ALKANESULFONATE MONOOXYGENASE-RELATED |
| CAI8058589.1 | IRON-SULFUR DOMAIN CONTAINING PROTEIN |
| CAI8058590.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8058591.1 | |
| CAI8058592.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8058593.1 | GLYOXALASE FAMILY PROTEIN |
| CAI8058594.1 | GLYOXALASE FAMILY PROTEIN |
| CAI8058595.1 | RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I |
| CAI8058596.1 | MONOCARBOXYLATE TRANSPORTER |
| CAI8058597.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8058598.1 | |
| CAI8058599.1 | EXOSOME COMPLEX COMPONENT |
| CAI8058600.1 | EXOSOME COMPLEX COMPONENT |
| CAI8058601.1 | EXOSOME COMPLEX COMPONENT |
| CAI8058602.1 | EXOSOME COMPLEX COMPONENT |
| CAI8058603.1 | ACYLPYRUVASE |
| CAI8058604.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8058605.1 | COLLAGEN ALPHA |
| CAI8058606.1 | |
| CAI8058607.1 | |
| CAI8058608.1 | |
| CAI8058611.1 | NUCLEAR PORE COMPLEX PROTEIN NUP160 |
| CAI8058610.1 | NUCLEAR PORE COMPLEX PROTEIN NUP160 |
| CAI8058609.1 | NUCLEAR PORE COMPLEX PROTEIN NUP160 |
| CAI8058613.1 | NUCLEAR PORE COMPLEX PROTEIN NUP160 |
| CAI8058612.1 | NUCLEAR PORE COMPLEX PROTEIN NUP160 |
| CAI8058615.1 | |
| CAI8058614.1 | |
| CAI8058616.1 | NUCLEAR PORE COMPLEX PROTEIN NUP160 |
| CAI8058617.1 | NUCLEAR PORE COMPLEX PROTEIN NUP160 |
| CAI8058618.1 | NUCLEAR PORE COMPLEX PROTEIN NUP160 |
| CAI8058619.1 | |
| CAI8058620.1 | PEPTIDASE |
