About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50%31,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8058421.1
CAI8058423.1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
CAI8058422.1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
CAI8058424.1
CAI8058425.1
CAI8058426.1
CAI8058427.1
CAI8058428.1
CAI8058429.1
CAI8058430.1
CAI8058431.1
CAI8058432.1
CAI8058433.1
CAI8058435.1APG9 AUTOPHAGY 9
CAI8058434.1APG9 AUTOPHAGY 9
CAI8058436.1APG9 AUTOPHAGY 9
CAI8058437.1CYTOCHROME C OXIDASE ASSEMBLY FACTOR 1 HOMOLOG
CAI8058438.1CYTOCHROME C OXIDASE ASSEMBLY FACTOR 1 HOMOLOG
CAI8058439.1REGULATOR-RELATED
CAI8058440.1
CAI8058441.1METHYLENETETRAHYDROFOLATE REDUCTASE
CAI8058443.1METHYLENETETRAHYDROFOLATE REDUCTASE
CAI8058442.1METHYLENETETRAHYDROFOLATE REDUCTASE
CAI8058444.1PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
CAI8058445.1
CAI8058446.1
CAI8058447.1BONUS, ISOFORM C-RELATED
CAI8058448.1METALLOPEPTIDASE M28 FAMILY MEMBER
CAI8058449.1METALLOPEPTIDASE M28 FAMILY MEMBER
CAI8058450.1
CAI8058451.1
CAI8058452.1
CAI8058454.1
CAI8058453.1
CAI8058455.1
CAI8058457.1
CAI8058456.1
CAI8058458.1
CAI8058459.1
CAI8058460.1CYCLIN
CAI8058461.1DIAMINOPIMELATE DECARBOXYLASE
CAI8058462.126S PROTEASOME REGULATORY SUBUNIT
CAI8058463.1TBC1 DOMAIN FAMILY MEMBER 7
CAI8058465.1
CAI8058466.1
CAI8058464.1
CAI8058467.1
CAI8058468.1
CAI8058469.1
CAI8058474.1
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