The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides60277 | BONUS, ISOFORM C-RELATED |
| Paelopatides60278 | |
| Paelopatides60279 | |
| Paelopatides60280 | RAD54-LIKE |
| Paelopatides60281 | RAD54-LIKE |
| Paelopatides60282 | SUSHI DOMAIN-CONTAINING PROTEIN 1 |
| Paelopatides60283 | PUTATIVE-RELATED |
| Paelopatides60284 | |
| Paelopatides60285 | |
| Paelopatides60286 | PROTEIN CBG26694 |
| Paelopatides60287 | POL PROTEIN |
| Paelopatides60288 | HELICASE WITH DEATH DOMAIN-RELATED |
| Paelopatides60289 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides60292 | |
| Paelopatides60293 | |
| Paelopatides60294 | |
| Paelopatides60295 | |
| Paelopatides60296 | PROTEIN CBG26694 |
| Paelopatides60297 | ATP-BINDING CASSETTE SUB-FAMILY C |
| Paelopatides60298 | |
| Paelopatides60299 | CRUMBS FAMILY MEMBER |
| Paelopatides60300 | (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME |
| Paelopatides60301 | |
| Paelopatides60302 | |
| Paelopatides60303 | GAG-RELATED PROTEIN |
| Paelopatides60304 | F5/8 TYPE C DOMAIN-CONTAINING PROTEIN |
| Paelopatides60305 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Paelopatides60306 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides60307 | |
| Paelopatides60308 | PROTEIN CBG26694 |
| Paelopatides60309 | POL PROTEIN |
| Paelopatides60310 | POL PROTEIN |
| Paelopatides60311 | |
| Paelopatides60312 | 5-HYDROXYTRYPTAMINE RECEPTOR |
| Paelopatides60313 | MUCIN-22 |
| Paelopatides60314 | |
| Paelopatides60315 | |
| Paelopatides60316 | |
| Paelopatides60317 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| Paelopatides60318 | NACHT DOMAIN-CONTAINING PROTEIN |
| Paelopatides60319 | B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR |
| Paelopatides60320 | |
| Paelopatides60321 | VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1 |
| Paelopatides60322 | VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1 |
| Paelopatides60323 | |
| Paelopatides60324 | |
| Paelopatides60325 | CDNA SEQUENCE BC048562 |
| Paelopatides60326 | UNCHARACTERIZED |
| Paelopatides60327 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides60328 |
