About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s007.g0538.t1ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER
Lsat_s007.g0539.t1INNER MEMBRANE PROTEIN YEDE
Lsat_s007.g0540.t1SOLUTE CARRIER FAMILY 25
Lsat_s007.g0541.t1MYOSIN LIGHT CHAIN 1, 3
Lsat_s007.g0542.t1BNIP - RELATED
Lsat_s007.g0543.t1ALPHA-MANNOSIDASE
Lsat_s007.g0544.t1OTU DOMAIN CONTAINING PROTEIN
Lsat_s007.g0545.t1RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED
Lsat_s007.g0546.t1CALPAIN
Lsat_s007.g0547.t1TYROSINE-PROTEIN KINASE
Lsat_s007.g0548.t1MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
Lsat_s007.g0549.t1TARGET OF ERK KINASE MPK-1
Lsat_s007.g0550.t1-
Lsat_s007.g0551.t1
Lsat_s007.g0552.t1
Lsat_s007.g0553.t1
Lsat_s007.g0554.t1SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11
Lsat_s007.g0555.t1
Lsat_s007.g0556.t1
Lsat_s007.g0557.t1NEUROTRANSMITTER GATED ION CHANNEL
Lsat_s007.g0558.t1CREB/ATF BZIP TRANSCRIPTION FACTOR
Lsat_s007.g0559.t1NEUROTRANSMITTER GATED ION CHANNEL
Lsat_s007.g0560.t1
Lsat_s007.g0561.t1
Lsat_s007.g0562.t1
Lsat_s007.g0563.t1GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE
Lsat_s007.g0564.t1
Lsat_s007.g0565.t1
Lsat_s007.g0566.t1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Lsat_s007.g0567.t1
Lsat_s007.g0568.t1
Lsat_s007.g0569.t1
Lsat_s007.g0570.t1
Lsat_s007.g0571.t1
Lsat_s007.g0572.t1
Lsat_s007.g0573.t1
Lsat_s007.g0574.t1
Lsat_s007.g0575.t1
Lsat_s007.g0576.t1
Lsat_s007.g0577.t1TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
Lsat_s007.g0578.t1HEPATOMA-DERIVED GROWTH FACTOR-RELATED
Lsat_s007.g0579.t1GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE MESH1
Lsat_s007.g0580.t1PHOSPHOSERINE AMINOTRANSFERASE
Lsat_s007.g0581.t1
Lsat_s007.g0582.t1PYRUVATE KINASE
Lsat_s007.g0583.t1CHITIN BINDING PERITROPHIN-A
Lsat_s007.g0584.t1
Lsat_s007.g0585.t1ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32
Lsat_s007.g0586.t1CORONIN
Lsat_s007.g0587.t1CYCLIN
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