Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s007.g0638.t1 | - |
| Lsat_s007.g0639.t1 | |
| Lsat_s007.g0640.t1 | |
| Lsat_s007.g0641.t1 | |
| Lsat_s007.g0642.t1 | |
| Lsat_s007.g0643.t1 | |
| Lsat_s007.g0644.t1 | CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE |
| Lsat_s007.g0645.t1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Lsat_s007.g0646.t1 | |
| Lsat_s007.g0647.t1 | UNCHARACTERIZED |
| Lsat_s007.g0648.t1 | |
| Lsat_s007.g0649.t1 | |
| Lsat_s007.g0650.t1 | |
| Lsat_s007.g0651.t1 | RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C |
| Lsat_s007.g0652.t1 | |
| Lsat_s007.g0653.t1 | TRANSMEMBRANE PROTEIN |
| Lsat_s007.g0654.t1 | ETHANOLAMINEPHOSPHOTRANSFERASE |
| Lsat_s007.g0655.t1 | DEP DOMAIN PROTEIN |
| Lsat_s007.g0656.t1 | SISTER CHROMATID COHESION PROTEIN DCC1-RELATED |
| Lsat_s007.g0657.t1 | |
| Lsat_s007.g0658.t1 | |
| Lsat_s007.g0659.t1 | PROTON CHANNEL OTOP |
| Lsat_s007.g0660.t1 | |
| Lsat_s007.g0661.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 17 |
| Lsat_s007.g0662.t1 | LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED |
| Lsat_s007.g0663.t1 | SPERM-SPECIFIC FAMILY, CLASS Q |
| Lsat_s007.g0664.t1 | SPERM-SPECIFIC FAMILY, CLASS Q |
| Lsat_s007.g0665.t1 | LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED |
| Lsat_s007.g0666.t1 | FI20236P1 |
| Lsat_s007.g0667.t1 | |
| Lsat_s007.g0668.t1 | RIBOSOME BIOGENESIS PROTEIN BRIX |
| Lsat_s007.g0669.t1 | |
| Lsat_s007.g0670.t1 | |
| Lsat_s007.g0671.t1 | CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE |
| Lsat_s007.g0672.t1 | MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER |
| Lsat_s007.g0673.t1 | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA |
| Lsat_s007.g0674.t1 | ZINC FINGER PROTEIN |
| Lsat_s007.g0675.t1 | HYALURONIC ACID-BINDING PROTEIN 4 |
| Lsat_s007.g0676.t1 | ANION EXCHANGE PROTEIN |
| Lsat_s007.g0677.t1 | |
| Lsat_s007.g0678.t1 | SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION |
| Lsat_s007.g0679.t1 | |
| Lsat_s007.g0680.t1 | RING/U-BOX SUPERFAMILY PROTEIN |
| Lsat_s007.g0681.t1 | RING/U-BOX SUPERFAMILY PROTEIN |
| Lsat_s007.g0682.t1 | NUCLEAR RECEPTOR BINDING FACTOR 2 |
| Lsat_s007.g0683.t1 | ZINC FINGER CCHC DOMAIN-CONTAINING |
| Lsat_s007.g0684.t1 | E3 UBIQUITIN-PROTEIN LIGASE TM129 |
| Lsat_s007.g0685.t1 | SET AND MYND DOMAIN-CONTAINING PROTEIN 5 |
| Lsat_s007.g0686.t1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| Lsat_s007.g0687.t1 | PARKIN COREGULATED GENE PROTEIN PARK2 COREGULATED |
