About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40%57,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52073EG:EG0003.4 PROTEIN-RELATED
Paelopatides52074
Paelopatides52075
Paelopatides52076MITOCHONDRIAL RIBOSOMAL PROTEIN L24
Paelopatides52077PYGOPUS
Paelopatides52078AMMONIUM TRANSPORTER
Paelopatides52079ANTIGEN 332, DBL-LIKE PROTEIN-RELATED
Paelopatides52080HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Paelopatides52081
Paelopatides52082ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides52083TORSIN
Paelopatides52113IP01054P
Paelopatides52115DED DOMAIN-CONTAINING PROTEIN
Paelopatides52116ATP-BINDING CASSETTE SUB-FAMILY B
Paelopatides52117GROWTH HORMONE-INDUCIBLE SOLUBLE PROTEIN-RELATED
Paelopatides52118AGAP005574-PA
Paelopatides52119SI:CH211-108C17.2-RELATED-RELATED
Paelopatides52120ENDONUCLEASE-RELATED
Paelopatides52121ZGC:195170
Paelopatides52122PROTEIN B, PUTATIVE-RELATED-RELATED
Paelopatides52123COFILIN-RELATED
Paelopatides52124
Paelopatides52125
Paelopatides52126
Paelopatides52127
Paelopatides52128
Paelopatides52129REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides52130
Paelopatides52131ENDONUCLEASE-RELATED
Paelopatides52132TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides52133ENDONUCLEASE-RELATED
Paelopatides52134ENDONUCLEASE-RELATED
Paelopatides52135
Paelopatides52136IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG
Paelopatides52137
Paelopatides52138RIBOSOMAL PROTEIN L13
Paelopatides52139HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides52141
Paelopatides52142
Paelopatides52143ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides52144PROTEIN CBG26694
Paelopatides52145
Paelopatides52146GLUCOSYLCERAMIDASE
Paelopatides52147
Paelopatides52148
Paelopatides52149RETROTRANSPOSON
Paelopatides52150
Paelopatides52151PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides52152
Paelopatides52153FORKHEAD BOX PROTEIN
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