The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides51868 | TOLL-LIKE RECEPTOR |
| Paelopatides51869 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Paelopatides51870 | TOLL-LIKE RECEPTOR |
| Paelopatides51871 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Paelopatides51872 | |
| Paelopatides51873 | LEUCOKININ RECEPTOR-RELATED |
| Paelopatides51874 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides51876 | BUCENTAUR RELATED |
| Paelopatides51877 | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 |
| Paelopatides51878 | RETROTRANSPOSON |
| Paelopatides51879 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Paelopatides51880 | |
| Paelopatides51882 | GLYCOSYLTRANSFERASE |
| Paelopatides51883 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Paelopatides51884 | AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C |
| Paelopatides51885 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Paelopatides51886 | MYOTUBULARIN-RELATED |
| Paelopatides51887 | STG PROTEIN |
| Paelopatides51888 | |
| Paelopatides51889 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides51890 | VACUOLAR PROTEIN SORTING 26 RELATED |
| Paelopatides51891 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Paelopatides51892 | DEATH DOMAIN-CONTAINING PROTEIN CRADD |
| Paelopatides51893 | |
| Paelopatides51894 | |
| Paelopatides51895 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
| Paelopatides51896 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides51897 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides51898 | |
| Paelopatides51899 | SLR5058 PROTEIN |
| Paelopatides51900 | F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides51901 | |
| Paelopatides51902 | NACHT DOMAIN-CONTAINING PROTEIN |
| Paelopatides51903 | FI04643P-RELATED |
| Paelopatides51904 | NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED |
| Paelopatides51905 | TUBULIN POLYGLUTAMYLASE |
| Paelopatides51906 | CS DOMAIN-CONTAINING PROTEIN |
| Paelopatides51907 | DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1 |
| Paelopatides51908 | PROTEIN CBG26694 |
| Paelopatides51909 | |
| Paelopatides51910 | |
| Paelopatides51911 | |
| Paelopatides51912 | |
| Paelopatides51913 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides51914 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides51915 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 |
| Paelopatides51916 | BETA-HEXOSAMINIDASE |
| Paelopatides51917 | TRANSMEMBRANE PROTEIN |
| Paelopatides51918 | |
| Paelopatides51919 | TRANSMEMBRANE 7 SUPERFAMILY MEMBER 3 |
